Homologs in group_85

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11 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04895 FBDBKF_04895 71.8 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
FBDBKF_10875 FBDBKF_10875 69.0 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_05350 EHELCC_05350 69.0 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_06185 EHELCC_06185 71.8 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_05670 NLDBIP_05670 69.0 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_06505 NLDBIP_06505 71.8 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_02550 LHKJJB_02550 69.0 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_03385 LHKJJB_03385 71.8 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_06860 HKOGLL_06860 71.8 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_15930 HKOGLL_15930 69.0 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
PMI_RS01470 PMI_RS01470 58.3 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator

Distribution of the homologs in the orthogroup group_85

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_85

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q3J6K8 3.04e-55 178 41 2 213 1 acuR Transcriptional regulator AcuR Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
Q9RAJ1 8.06e-34 122 34 2 187 4 dhaR HTH-type transcriptional repressor DhaR Mycobacterium sp. (strain GP1)
P67430 1.34e-19 85 30 5 188 1 nemR HTH-type transcriptional repressor NemR Escherichia coli (strain K12)
P67431 1.34e-19 85 30 5 188 3 nemR HTH-type transcriptional repressor NemR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P42105 5.25e-12 65 23 6 197 1 yxaF Uncharacterized HTH-type transcriptional regulator YxaF Bacillus subtilis (strain 168)
P42097 1.27e-11 64 31 3 143 4 None Uncharacterized HTH-type transcriptional regulator in lacX 3'region Lactococcus lactis subsp. lactis
O34619 3.94e-07 52 23 5 194 4 lmrA HTH-type transcriptional regulator LmrA Bacillus subtilis (strain 168)
A0R4Z6 5.35e-07 51 27 3 112 1 kstR2 HTH-type transcriptional repressor KstR2 Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P40950 3.84e-06 50 35 1 64 4 yuxN Uncharacterized HTH-type transcriptional regulator YuxN Bacillus subtilis (strain 168)
P9WMB9 1.15e-05 47 30 2 92 1 kstR2 HTH-type transcriptional repressor KstR2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMB8 1.15e-05 47 30 2 92 3 kstR2 HTH-type transcriptional repressor KstR2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P96701 5.55e-05 45 30 0 70 4 ydgC Uncharacterized HTH-type transcriptional regulator YdgC Bacillus subtilis (strain 168)
O31500 0.000111 45 37 0 54 4 yerO Uncharacterized HTH-type transcriptional regulator YerO Bacillus subtilis (strain 168)
P32398 0.000534 43 26 2 92 4 yhgD Uncharacterized HTH-type transcriptional regulator YhgD Bacillus subtilis (strain 168)
P94548 0.000714 42 25 0 70 1 fadR Fatty acid metabolism regulator protein Bacillus subtilis (strain 168)
P28815 0.001 42 23 4 162 1 tetC Transposon Tn10 TetC protein Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11535
Feature type CDS
Gene -
Product TetR/AcrR family transcriptional regulator
Location 455887 - 456531 (strand: 1)
Length 645 (nucleotides) / 214 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_85
Orthogroup size 12
N. genomes 7

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family
PF16925 Tetracyclin repressor-like, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K16137 TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon - -

Protein Sequence

MTDTLVTKPRRGRPPKNHDSGIDVRELLIRSGTEMFTEKGYMTSDINGILKKVGIPKGSFYYYFKSKEQFGLEIMRHYDSYFSHLLDKYLSDPASPPLTRLVRFYQSTKSAMEKYDWQRGCLVGNLGQEVTNLPDGYGGILKTIISGWQKKVEVCLSQAQALNDISALVDCRLMAVFFWMGWEGAVMQAKLARNGEPLDIFITIFINELIKNKA

Flanking regions ( +/- flanking 50bp)

TTTATCCGGTAACCGGCCAATATTATTGTGAATGACGGGAGATATATTTAATGACGGACACATTAGTCACTAAACCCAGGCGTGGGCGACCGCCGAAAAATCATGACTCAGGAATTGATGTCAGAGAATTGCTTATCCGCAGCGGTACAGAGATGTTTACTGAAAAAGGTTATATGACATCGGATATTAACGGGATACTGAAAAAAGTGGGTATACCGAAAGGATCTTTTTATTATTACTTTAAAAGTAAAGAGCAGTTTGGTCTTGAGATCATGCGTCATTACGACAGCTATTTCTCGCATTTACTGGATAAGTACCTGTCTGATCCTGCGTCGCCACCTCTGACCCGCTTAGTCAGATTTTATCAGTCGACAAAATCCGCTATGGAAAAGTATGACTGGCAGCGCGGATGTTTAGTCGGTAATCTCGGGCAGGAAGTGACTAATTTACCCGACGGATATGGCGGAATATTAAAGACTATTATCAGCGGGTGGCAAAAAAAAGTGGAAGTCTGTCTGTCGCAGGCACAGGCTCTGAATGATATTTCAGCCTTAGTTGATTGCAGACTGATGGCCGTATTTTTCTGGATGGGATGGGAAGGGGCGGTTATGCAGGCTAAACTGGCCCGCAACGGTGAGCCTCTGGATATATTTATCACTATTTTCATAAATGAATTGATTAAAAATAAAGCATAACCGTGTTTCGGTGTGCTGCCCGCCCGGTCGTTATTGAAGAATAATTTATC