Homologs in group_787

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03685 FBDBKF_03685 98.5 Morganella morganii S1 ybdD DUF466 domain-containing protein
EHELCC_06850 EHELCC_06850 98.5 Morganella morganii S2 ybdD DUF466 domain-containing protein
NLDBIP_07175 NLDBIP_07175 98.5 Morganella morganii S4 ybdD DUF466 domain-containing protein
LHKJJB_06710 LHKJJB_06710 98.5 Morganella morganii S3 ybdD DUF466 domain-containing protein
HKOGLL_04220 HKOGLL_04220 98.5 Morganella morganii S5 ybdD DUF466 domain-containing protein
PMI_RS00690 PMI_RS00690 67.7 Proteus mirabilis HI4320 - YbdD/YjiX family protein

Distribution of the homologs in the orthogroup group_787

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_787

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAT1 2.24e-36 119 78 0 65 4 ybdD Uncharacterized protein YbdD Shigella flexneri
P0AAS9 2.24e-36 119 78 0 65 4 ybdD Uncharacterized protein YbdD Escherichia coli (strain K12)
P0AAT0 2.24e-36 119 78 0 65 4 ybdD Uncharacterized protein YbdD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ADD1 1.59e-27 96 64 1 67 4 yjiX Uncharacterized protein YjiX Shigella flexneri
P0ADC8 1.59e-27 96 64 1 67 4 yjiX Uncharacterized protein YjiX Escherichia coli (strain K12)
P0ADC9 1.59e-27 96 64 1 67 4 yjiX Uncharacterized protein YjiX Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ADD0 1.59e-27 96 64 1 67 4 yjiX Uncharacterized protein YjiX Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11185
Feature type CDS
Gene -
Product YbdD/YjiX family protein
Location 375824 - 376021 (strand: -1)
Length 198 (nucleotides) / 65 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_787
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04328 Selenoprotein, putative

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2879 Function unknown (S) S Uncharacterized short protein YbdD, DUF466 family

Protein Sequence

MFDTLAKAGRYLGQTAKMMIGVPDYDNYVQHIKNTHPDQTPMTYEEFFRDRQDARYGSKGGPKCC

Flanking regions ( +/- flanking 50bp)

GCGGGCAACCGCCGGTTTTCCATCCGCAAGACAGTTTCAGGGTTATAATTATGTTTGATACTCTCGCAAAAGCAGGACGTTATCTCGGGCAGACCGCTAAAATGATGATTGGCGTACCCGATTACGATAATTACGTACAGCATATTAAAAATACCCATCCTGATCAGACGCCGATGACCTATGAAGAGTTTTTCCGTGATCGCCAGGATGCACGCTACGGCAGCAAAGGCGGACCTAAGTGCTGCTGATACAGCCGACGGATTTGACATAAAAAAATACCGCAAATCTCTGCGGTATT