COG2879


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2879, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized short protein YbdD, DUF466 family
Function(s) descr. Function unknown (S)

Occurence in the database

COG2879 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_787 FBDBKF_03685 141471 141668 1 ybdD DUF466 domain-containing protein Morganella morganii S1
1 group_787 EHELCC_06850 105435 105632 -1 ybdD DUF466 domain-containing protein Morganella morganii S2
2 group_787 NLDBIP_07175 105308 105505 -1 ybdD DUF466 domain-containing protein Morganella morganii S4
3 group_787 LHKJJB_06710 69054 69251 -1 ybdD DUF466 domain-containing protein Morganella morganii S3
4 group_787 HKOGLL_04220 164136 164333 1 ybdD DUF466 domain-containing protein Morganella morganii S5
5 group_787 F4V73_RS11185 375824 376021 -1 YbdD/YjiX family protein Morganella psychrotolerans
6 group_787 PMI_RS00690 178215 178421 1 YbdD/YjiX family protein Proteus mirabilis HI4320