Homologs in group_798

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03745 FBDBKF_03745 95.1 Morganella morganii S1 hycB Fe-S-cluster-containing hydrogenase component 2
EHELCC_06790 EHELCC_06790 95.1 Morganella morganii S2 hycB Fe-S-cluster-containing hydrogenase component 2
NLDBIP_07115 NLDBIP_07115 95.1 Morganella morganii S4 hycB Fe-S-cluster-containing hydrogenase component 2
LHKJJB_06650 LHKJJB_06650 95.1 Morganella morganii S3 hycB Fe-S-cluster-containing hydrogenase component 2
HKOGLL_04280 HKOGLL_04280 95.1 Morganella morganii S5 hycB Fe-S-cluster-containing hydrogenase component 2
PMI_RS12500 PMI_RS12500 72.7 Proteus mirabilis HI4320 - 4Fe-4S dicluster domain-containing protein

Distribution of the homologs in the orthogroup group_798

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_798

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P23481 6.11e-69 212 53 3 190 2 hyfA Hydrogenase-4 component A Escherichia coli (strain K12)
P0AAK3 6.06e-65 202 49 1 204 3 hycB Formate hydrogenlyase subunit 2 Shigella flexneri
P0AAK1 6.06e-65 202 49 1 204 1 hycB Formate hydrogenlyase subunit 2 Escherichia coli (strain K12)
P0AAK2 6.06e-65 202 49 1 204 3 hycB Formate hydrogenlyase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAK4 2.45e-32 117 36 4 195 3 hydN Electron transport protein HydN Escherichia coli (strain K12)
P0AAK5 2.45e-32 117 36 4 195 3 hydN Electron transport protein HydN Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAK6 2.45e-32 117 36 4 195 3 hydN Electron transport protein HydN Escherichia coli O157:H7
P37127 4.79e-31 122 34 4 210 2 aegA Putative oxidoreductase AegA Escherichia coli (strain K12)
Q46819 3.71e-30 112 36 4 191 4 ygfS Putative electron transport protein YgfS Escherichia coli (strain K12)
P56256 4.65e-30 111 35 3 191 4 ysaA Putative electron transport protein YsaA Escherichia coli (strain K12)
Q46820 1.56e-26 109 32 5 204 2 uacF Putative oxidoreductase UacF Escherichia coli (strain K12)
P20925 1.09e-25 100 38 4 157 4 None Frd operon probable iron-sulfur subunit A (Fragment) Proteus vulgaris
P31894 1.93e-22 92 32 3 185 1 cooF Iron-sulfur protein Rhodospirillum rubrum
Q57713 2.03e-17 79 31 3 165 3 MJ0265 Uncharacterized ferredoxin MJ0265 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q7WTT9 1.06e-14 73 28 7 202 1 arrB Arsenate respiratory reductase iron-sulfur subunit ArrB Shewanella sp. (strain ANA-3)
Q57619 8.28e-14 69 24 4 193 3 MJ0155 Uncharacterized ferredoxin MJ0155 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q57712 5.65e-11 61 27 4 171 3 MJ0264 Uncharacterized protein MJ0264 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P27273 8.18e-11 62 39 2 94 1 fdhB1 Formate dehydrogenase iron-sulfur subunit Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
Q9HR73 1.22e-10 62 28 8 189 2 dmsB Putative dimethyl sulfoxide reductase iron-sulfur subunit B Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P31076 4.39e-10 60 27 6 203 4 psrB Polysulfide reductase chain B Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
O30080 1.6e-09 58 27 7 172 3 ttrB Tetrathionate reductase subunit B Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P45003 1.91e-09 58 24 7 206 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AAK9 1.91e-09 58 27 8 191 3 nrfC Protein NrfC Shigella flexneri
P0AAK7 1.91e-09 58 27 8 191 3 nrfC Protein NrfC Escherichia coli (strain K12)
P0AAK8 1.91e-09 58 27 8 191 3 nrfC Protein NrfC Escherichia coli O157:H7
P0A1I1 2.3e-09 58 28 7 181 1 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1I2 2.3e-09 58 28 7 181 3 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhi
P0AAJ1 8.6e-09 56 31 4 109 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli (strain K12)
P0AAJ2 8.6e-09 56 31 4 109 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P45015 9.41e-09 56 26 6 192 3 nrfC Protein NrfC homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P18776 2.37e-08 55 28 2 104 1 dmsB Anaerobic dimethyl sulfoxide reductase chain B Escherichia coli (strain K12)
Q7CQM9 2.6e-08 55 33 3 103 1 ttrB Tetrathionate reductase subunit B Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q83RZ7 2.95e-08 55 28 2 104 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Shigella flexneri
Q8X616 7.88e-08 54 28 8 192 3 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli O157:H7
P77375 7.96e-08 54 28 8 192 2 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli (strain K12)
D3RNN7 8.15e-08 54 27 4 115 1 soeB Sulfite dehydrogenase subunit B Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)
P0AAJ7 2.9e-07 53 24 7 205 3 fdoH Formate dehydrogenase-O iron-sulfur subunit Shigella flexneri
P0AAJ5 2.9e-07 53 24 7 205 1 fdoH Formate dehydrogenase-O iron-sulfur subunit Escherichia coli (strain K12)
P0AAJ6 2.9e-07 53 24 7 205 3 fdoH Formate dehydrogenase-O iron-sulfur subunit Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8L3A9 4.3e-07 52 28 7 176 1 padI NADH-dependent phenylglyoxylate dehydrogenase subunit beta Aromatoleum evansii
P0AAJ4 8.86e-07 51 25 9 216 3 fdnH Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Shigella flexneri
P0AAJ3 8.86e-07 51 25 9 216 1 fdnH Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Escherichia coli (strain K12)
P0AAK0 1.37e-05 48 23 11 233 3 hybA Hydrogenase-2 operon protein HybA Shigella flexneri
P0AAJ8 1.37e-05 48 23 11 233 3 hybA Hydrogenase-2 operon protein HybA Escherichia coli (strain K12)
P0AAJ9 1.37e-05 48 23 11 233 3 hybA Hydrogenase-2 operon protein HybA Escherichia coli O157:H7
P33389 2.72e-05 47 27 11 198 4 DVU_0535 Protein DVU_0535 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
O29751 3.09e-05 47 40 1 54 1 hmeA Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P44450 5.28e-05 46 24 8 206 3 fdxH Formate dehydrogenase iron-sulfur subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q58593 0.000158 45 29 3 118 4 vhuB Polyferredoxin protein VhuB Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q00388 0.000161 45 26 4 127 4 vhuB Polyferredoxin protein VhuB Methanococcus voltae
P60232 0.000226 44 26 9 186 1 mvhB Polyferredoxin protein MvhB Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)
P03941 0.000236 41 34 1 69 1 None Ferredoxin Alicyclobacillus acidocaldarius subsp. acidocaldarius
O52682 0.000441 43 43 2 51 1 hydB Bifurcating [FeFe] hydrogenase beta subunit Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P81293 0.000654 43 27 11 190 4 MJ0514.2 Uncharacterized polyferredoxin-like protein MJ0514.2 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q45560 0.000779 40 32 0 58 1 fdxA Ferredoxin 7Fe Hydrogenibacillus schlegelii

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11125
Feature type CDS
Gene -
Product 4Fe-4S dicluster domain-containing protein
Location 363961 - 364578 (strand: 1)
Length 618 (nucleotides) / 205 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_798
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00037 4Fe-4S binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1142 Energy production and conversion (C) C Fe-S-cluster-containing hydrogenase component 2

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12136 hydrogenase-4 component A [EC:1.-.-.-] - -

Protein Sequence

MNRFVIADPQLCIGCNTCMAACSETHKQQGLQTHPRLTVVKIGELTAPMLCRQCDDAPCARVCPVNAITHENDMIVLNESLCIGCKLCGLVCPFGAITPSGSKPVDMPDFFEQYVPKEMLLDVPDSLPTMNPFLAWNAGIRNVAVKCDMCDFSEEGPACVKVCPTDALHIVEENQLESESAKRRTASVDAMPPEFDVFVSRQENP

Flanking regions ( +/- flanking 50bp)

GAGTGCATCAATCTTTATGACTCGTCTGATTTTATTGGAGGGTGAGGCGAATGAATCGCTTTGTTATTGCCGACCCACAACTCTGTATCGGATGTAATACTTGCATGGCGGCCTGTTCTGAGACGCATAAACAGCAAGGATTACAAACACATCCGCGACTGACTGTGGTAAAAATTGGGGAACTGACTGCGCCGATGCTTTGTCGCCAGTGTGATGATGCCCCGTGTGCCCGTGTGTGTCCGGTGAATGCCATCACACACGAAAATGACATGATCGTGCTGAATGAAAGTCTGTGTATCGGCTGCAAATTGTGTGGTCTGGTCTGTCCGTTCGGGGCAATTACCCCGTCAGGCAGTAAACCTGTCGATATGCCGGATTTCTTCGAACAGTATGTGCCGAAAGAAATGCTGCTGGATGTACCTGACAGCCTGCCGACCATGAACCCGTTCCTGGCGTGGAATGCCGGTATCCGCAATGTTGCAGTGAAATGTGACATGTGTGATTTCAGCGAAGAAGGCCCGGCGTGTGTGAAAGTCTGTCCGACCGATGCCCTCCATATTGTTGAAGAGAATCAGCTGGAAAGCGAAAGCGCGAAACGACGCACGGCATCTGTTGATGCTATGCCGCCGGAATTCGACGTTTTTGTCTCACGACAGGAGAATCCATAATGACATCGCTTGAACTGCTCTTGTGGTCGGTTTCCCTGTATACCGCAGGG