Homologs in group_310

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09025 FBDBKF_09025 78.0 Morganella morganii S1 fimA Pilin (type 1 fimbrial protein)
EHELCC_10385 EHELCC_10385 78.0 Morganella morganii S2 fimA Pilin (type 1 fimbrial protein)
NLDBIP_10730 NLDBIP_10730 78.0 Morganella morganii S4 fimA Pilin (type 1 fimbrial protein)
LHKJJB_10625 LHKJJB_10625 78.0 Morganella morganii S3 fimA Pilin (type 1 fimbrial protein)
HKOGLL_13685 HKOGLL_13685 78.0 Morganella morganii S5 fimA Pilin (type 1 fimbrial protein)
PMI_RS01245 PMI_RS01245 46.9 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS01295 PMI_RS01295 56.5 Proteus mirabilis HI4320 - fimbrial protein

Distribution of the homologs in the orthogroup group_310

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_310

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76500 3.79e-24 95 37 2 140 2 yfcQ Uncharacterized fimbrial-like protein YfcQ Escherichia coli (strain K12)
P76501 1.08e-18 81 35 4 133 2 yfcR Uncharacterized fimbrial-like protein YfcR Escherichia coli (strain K12)
P42187 2.91e-15 72 34 6 148 1 prsF Minor fimbrial protein PrsF Escherichia coli
P08408 1.05e-13 68 33 6 148 1 papF Fimbrial adapter PapF Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10945
Feature type CDS
Gene -
Product fimbrial protein
Location 331519 - 332058 (strand: 1)
Length 540 (nucleotides) / 179 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_310
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MDERIKIERVRWFLCSVFCVFPLIASAGALPQAAAGLRGVPGITYITIRGNVIAPPPCVINGGNTILVDFGEVMSTRIDGVRYRQPVNYSAECTKMPTNAMTLAITGNAAGFDSDALRTEISGLGVRLLYQGRQLGLGEKVTFTYPAFPVLEAVPVRDISAVLTGGDFAATATLELDYQ

Flanking regions ( +/- flanking 50bp)

TGCAGTGTGGCAAAAACAGCAGCCGGTAACTGAGCCGACAGGAGATAACCATGGATGAGCGGATAAAAATAGAGCGGGTACGGTGGTTTCTCTGTTCCGTATTCTGTGTCTTTCCGCTGATAGCGTCAGCGGGAGCCTTACCACAGGCAGCAGCCGGTTTGCGGGGTGTTCCGGGGATAACCTATATCACCATCCGCGGCAATGTTATTGCGCCACCGCCCTGTGTCATTAACGGCGGCAATACAATTTTAGTGGATTTCGGTGAGGTGATGAGTACGCGCATTGACGGTGTGCGTTACCGGCAGCCGGTTAATTACAGCGCGGAATGTACAAAGATGCCGACGAATGCCATGACGCTGGCGATAACAGGGAATGCCGCCGGGTTTGATTCGGACGCACTGCGCACTGAAATCAGCGGATTAGGTGTGCGCCTTCTGTATCAGGGGCGTCAGCTTGGTCTGGGGGAAAAAGTGACCTTCACCTATCCCGCTTTCCCGGTACTGGAAGCCGTTCCTGTCCGCGACATCAGCGCGGTGCTTACCGGTGGTGATTTTGCGGCGACGGCCACGTTAGAGCTGGACTATCAGTAAGGAGCCTGATGATGACAACAACGAATAACAGGCGATTTGTGCATTACCTG