Homologs in group_316

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09310 FBDBKF_09310 85.4 Morganella morganii S1 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
EHELCC_10100 EHELCC_10100 85.4 Morganella morganii S2 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
NLDBIP_10445 NLDBIP_10445 85.4 Morganella morganii S4 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
LHKJJB_10910 LHKJJB_10910 85.4 Morganella morganii S3 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
HKOGLL_13970 HKOGLL_13970 85.4 Morganella morganii S5 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
F4V73_RS08335 F4V73_RS08335 37.9 Morganella psychrotolerans sctR type III secretion system export apparatus subunit SctR
PMI_RS13245 PMI_RS13245 62.9 Proteus mirabilis HI4320 - EscR/YscR/HrcR family type III secretion system export apparatus protein

Distribution of the homologs in the orthogroup group_316

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_316

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1L4 8.91e-81 243 56 1 213 3 spaP Surface presentation of antigens protein SpaP Shigella sonnei
P0A1L3 8.91e-81 243 56 1 213 1 spaP Surface presentation of antigens protein SpaP Shigella flexneri
P40700 3.72e-75 229 58 2 218 1 spaP Surface presentation of antigens protein SpaP Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q56023 4.06e-75 229 58 2 218 3 spaP Surface presentation of antigens protein SpaP Salmonella typhi
P69981 4.46e-50 165 45 2 191 3 yscR Yop proteins translocation protein R Yersinia pseudotuberculosis serotype I (strain IP32953)
P69980 4.46e-50 165 45 2 191 3 yscR Yop proteins translocation protein R Yersinia pestis
Q46646 4.49e-42 144 39 4 206 3 hrcR Harpin secretion protein HrcR Erwinia amylovora
P37828 2.81e-39 137 36 2 216 3 None Pathogenicity-related ORF2 Xanthomonas campestris pv. glycines
P74890 1.82e-38 135 34 5 219 2 yscR Virulence protein YscR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q52488 2.31e-37 132 36 2 212 3 hrcR Hypersensitivity response secretion protein HrcR Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
P55720 2.23e-36 130 38 3 191 3 NGR_a00610 Probable translocation protein y4yL Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P54700 1.26e-35 129 35 2 209 1 fliP Flagellar biosynthetic protein FliP Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AC05 5.01e-35 127 35 3 210 3 fliP Flagellar biosynthetic protein FliP Escherichia coli (strain K12)
P0AC06 5.01e-35 127 35 3 210 3 fliP Flagellar biosynthetic protein FliP Escherichia coli O157:H7
Q60236 8.01e-35 125 39 0 203 3 hrpW Harpin secretion protein HrpW Pseudomonas syringae pv. syringae
Q47856 2.13e-34 125 37 2 202 3 hrcR Harpin secretion protein HrcR Pantoea agglomerans pv. gypsophilae
Q45980 1.45e-32 121 32 3 213 3 fliP Flagellar biosynthetic protein FliP Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q9X5A6 1.7e-32 121 34 4 213 3 fliP Flagellar biosynthetic protein FliP Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104)
O85133 4.57e-32 121 34 4 213 3 fliP Flagellar biosynthetic protein FliP Cereibacter sphaeroides
P37827 5.44e-32 119 31 4 207 3 fliP Flagellar biosynthetic protein FliP Rhizobium meliloti (strain 1021)
Q51468 2.63e-31 118 33 5 217 3 fliP Flagellar biosynthetic protein FliP Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P34200 5.57e-31 117 34 3 210 3 fliP Flagellar biosynthetic protein FliP Pectobacterium carotovorum subsp. carotovorum
P35528 7.94e-31 115 32 4 214 3 fliP Flagellar biosynthetic protein FliP Bacillus subtilis (strain 168)
Q8KA37 9.88e-30 116 34 4 209 3 fliP Flagellar biosynthetic protein FliP Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57184 1.39e-29 116 34 3 209 3 fliP Flagellar biosynthetic protein FliP Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P74930 2.03e-29 113 33 5 201 3 fliP Flagellar biosynthetic protein FliP Treponema pallidum (strain Nichols)
Q89AZ2 3.36e-29 114 33 3 209 3 fliP Flagellar biosynthetic protein FliP Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q44344 9.54e-29 111 31 4 206 3 fliP Flagellar biosynthetic protein FliP Agrobacterium fabrum (strain C58 / ATCC 33970)
Q44763 9.4e-28 108 32 3 196 3 fliP Flagellar biosynthetic protein FliP Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
O67750 2.93e-26 104 28 4 222 3 fliP Flagellar biosynthetic protein FliP Aquifex aeolicus (strain VF5)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10655
Feature type CDS
Gene -
Product EscR/YscR/HrcR family type III secretion system export apparatus protein
Location 261042 - 261701 (strand: 1)
Length 660 (nucleotides) / 219 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_316
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00813 FliP family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4790 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretory pathway, EscR/YscR component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22507 type III secretion system export apparatus protein - -

Protein Sequence

MTDSAVSMMVMLAAASLLPFILAAGTCYLKFSIVFVMVRNALGVQQVPSNMVLNAIALILSMVVMFPIASKTYYYTVENPVELSQPESLTRFVDEGLHDYRQYLFRYADKSLLHFFAQPDSDDDQYTELDENSDISFFHLLAAYALAEIKAAFLISFYLYLPFIVIDLIVSSVLLALGMMMMSPVTLSVPIKLILFIALDGWSLLSTSLVSQYIELMDT

Flanking regions ( +/- flanking 50bp)

GGGGAGCATTTTGCTGTCGAGATTCACCACCTTTTTCATAAGGATGCGTGATGACTGACAGCGCCGTATCCATGATGGTGATGCTGGCGGCGGCATCATTGTTACCCTTTATACTCGCCGCCGGAACCTGCTACCTTAAATTTTCCATTGTATTCGTGATGGTGCGCAATGCCCTGGGAGTGCAGCAGGTCCCGTCAAATATGGTGCTCAATGCCATTGCCCTTATTTTATCCATGGTGGTGATGTTCCCCATAGCCAGTAAAACTTATTACTATACGGTGGAAAATCCGGTTGAATTGTCACAACCGGAGTCGCTCACCCGCTTTGTAGATGAGGGGCTGCATGATTACCGGCAGTATTTATTCCGCTATGCGGATAAATCCCTGCTGCACTTTTTCGCACAACCTGACAGCGATGATGATCAGTACACTGAATTGGATGAAAACAGCGATATTTCATTTTTTCACCTGCTCGCCGCTTATGCATTAGCAGAAATAAAAGCAGCATTTTTGATCAGTTTTTACCTCTATCTGCCGTTTATTGTGATCGATCTTATTGTCTCCAGTGTGCTGCTTGCGCTCGGAATGATGATGATGAGCCCGGTGACACTCTCTGTCCCGATCAAACTGATCTTATTTATTGCGCTGGATGGCTGGTCGCTGCTCTCAACCAGCTTGGTCTCACAATACATTGAACTTATGGATACATGATATGGATATCATTTACGCTGCAGATAAAGGGATTTATCTGGTGATCATAT