Homologs in group_317

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09340 FBDBKF_09340 81.9 Morganella morganii S1 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
EHELCC_10070 EHELCC_10070 81.9 Morganella morganii S2 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
NLDBIP_10415 NLDBIP_10415 81.9 Morganella morganii S4 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
LHKJJB_10940 LHKJJB_10940 81.9 Morganella morganii S3 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
HKOGLL_14000 HKOGLL_14000 81.9 Morganella morganii S5 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
F4V73_RS08300 F4V73_RS08300 40.4 Morganella psychrotolerans sctV type III secretion system export apparatus subunit SctV
PMI_RS13275 PMI_RS13275 56.8 Proteus mirabilis HI4320 - EscV/YscV/HrcV family type III secretion system export apparatus protein

Distribution of the homologs in the orthogroup group_317

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_317

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1I6 0.0 643 49 4 688 3 mxiA Protein MxiA Shigella sonnei
P0A1I5 0.0 643 49 4 688 1 mxiA Protein MxiA Shigella flexneri
P0A1I3 0.0 634 48 3 687 1 invA Invasion protein InvA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1I4 0.0 634 48 3 687 3 invA Invasion protein InvA Salmonella typhi
P69956 5.5e-167 498 40 14 699 3 lcrD Low calcium response locus protein D Yersinia pseudotuberculosis serotype I (strain IP32953)
P69955 5.5e-167 498 40 14 699 3 lcrD Low calcium response locus protein D Yersinia pestis
P0C2V3 3.34e-166 496 40 14 703 1 lcrD Low calcium response locus protein D Yersinia enterocolitica
A1JU76 1.03e-165 495 40 14 703 3 lcrD Low calcium response locus protein D Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P55726 2.59e-142 434 36 8 693 3 NGR_a00530 Probable translocation protein y4yR Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P74856 2.59e-141 431 37 13 691 1 ssaV Secretion system apparatus protein SsaV Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
D0ZWU0 2.59e-141 431 37 13 691 3 ssaV Secretion system apparatus protein SsaV Salmonella typhimurium (strain 14028s / SGSC 2262)
B5FII7 2.59e-141 431 37 13 691 3 ssaV Secretion system apparatus protein SsaV Salmonella dublin (strain CT_02021853)
P35654 2.98e-137 422 37 11 695 3 hrpI Harpin secretion protein HrpI Erwinia amylovora
P35656 2.86e-136 419 38 12 659 3 hrcV Hypersensitivity response secretion protein HrcV Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
P35655 3.1e-136 419 36 13 702 3 hrpI Hypersensitivity response secretion protein HrpI Pseudomonas syringae pv. syringae
P76298 1.03e-114 363 34 12 668 3 flhA Flagellar biosynthesis protein FlhA Escherichia coli (strain K12)
D3GS80 1.25e-105 339 33 13 686 3 lfhA Putative flagellar export/assembly protein LfhA Escherichia coli O44:H18 (strain 042 / EAEC)
Q89AN5 6.18e-104 335 33 15 686 3 flhA Flagellar biosynthesis protein FlhA Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9S0 7.43e-103 332 32 16 709 3 flhA Flagellar biosynthesis protein FlhA Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P40729 1.92e-102 331 34 12 668 1 flhA Flagellar biosynthesis protein FlhA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q56887 1.35e-101 328 32 11 679 3 flhA Flagellar biosynthesis protein FlhA Yersinia enterocolitica
Q51910 2.35e-101 328 34 13 673 3 flhA Flagellar biosynthesis protein FlhA Proteus mirabilis
Q8YDK9 3.71e-101 328 32 11 685 1 flhA Flagellar biosynthesis protein FlhA Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P57335 2.34e-100 325 32 10 681 3 flhA Flagellar biosynthesis protein FlhA Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P35620 3.16e-98 319 35 13 679 1 flhA Flagellar biosynthesis protein FlhA Bacillus subtilis (strain 168)
O67265 6.18e-96 313 33 13 690 3 flhA Flagellar biosynthesis protein FlhA Aquifex aeolicus (strain VF5)
O06758 9.96e-91 301 31 15 693 1 flhA Flagellar biosynthesis protein FlhA Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZM40 1.02e-90 301 31 15 694 3 flhA Flagellar biosynthesis protein FlhA Helicobacter pylori (strain J99 / ATCC 700824)
Q03845 5.88e-84 282 32 15 697 3 flhA Flagellar biosynthesis protein FlhA Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q44909 3.96e-83 280 31 12 692 3 flhA Flagellar biosynthesis protein FlhA Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
P80150 4.27e-77 262 50 1 277 3 hrpC2 Protein hrpC2 Xanthomonas euvesicatoria
P80150 6.9e-34 141 39 2 189 3 hrpC2 Protein hrpC2 Xanthomonas euvesicatoria
Q47153 2.3e-70 243 30 10 570 5 lfhA Putative truncated flagellar export/assembly protein LfhA Escherichia coli (strain K12)
Q56338 3.47e-68 239 30 17 670 3 flhA Flagellar biosynthesis protein FlhA Treponema pallidum (strain Nichols)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10625
Feature type CDS
Gene -
Product EscV/YscV/HrcV family type III secretion system export apparatus protein
Location 254964 - 257024 (strand: 1)
Length 2061 (nucleotides) / 686 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_317
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00771 FHIPEP family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4789 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretory pathway, component EscV

Kegg Ortholog Annotation(s)

Protein Sequence

MLTSFINAVKNKPELSVLLIMIMVIAMLIIPLPKMLVDFLIGLNIVISILMLLLSFYITRILGFTSFPALLLITTLFRLALSISTSRLILLDADAGNIIQSFGDFVIGENIVVGFVIFAIVTIVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKSGLIDNEEVRKRRKELEQESQMYGAFDGAMKFIKGDAIAGIVIIFVNFAGGIGIGVAQMSMPFSEALSTYTLLTIGDGLVAQIPALLIAISAGFIVTRVSGTNQNLGANIVRELFSHDFTLLVTAVLALCMGMLPGFPAGIFGLLGGGLLVFYVSRMRQRKRQDAAAQKEGCTNAVMQEAQPSSENTFVSRGLTAENNEAIPLIITLHASYQTLFETKNIIAWLQEEFAFRYGFFLSGIIMNYSHDVSVYQSIVLINEIQSGTINCYPDKYKIIKENGALDSLNIEPVVIELKNGRKTYWADKKQCELCHASGMETEPGITVFFNEFSRIMTRHIQELLGIQETKTLLDNIENKYPELLKECYRYLSVQRVADVFQRLISEQISIRNIKTILGALVQWGQKEKDTLILVEHVRSQLARYISDRFTRNQVLHAVVLSNPVEEMVRQGIRQSAAGTFINLEPAQLDHFYDAMSVVMEPLREQQDIVLLTAMDIRRFVKKLIELHYPDVAVLSFSEIVPTTQVSVIESV

Flanking regions ( +/- flanking 50bp)

CATGAGTGAAATTATTCATACTCTATAACTTTTAATGGCAACGGATTGCTATGCTGACATCATTTATTAACGCGGTAAAAAATAAGCCGGAATTGTCCGTGCTGCTGATTATGATCATGGTGATCGCCATGCTGATCATTCCTCTGCCCAAGATGCTGGTGGATTTTCTGATCGGCCTGAATATCGTGATCTCCATCCTGATGTTATTGCTCTCTTTTTATATCACCCGTATCCTGGGATTTACCTCATTTCCGGCCTTGCTGCTTATCACCACACTGTTCCGTCTGGCGCTTTCTATCAGTACCAGCCGTTTGATCCTGCTGGATGCTGACGCAGGTAACATTATTCAGTCATTTGGTGATTTTGTTATCGGCGAAAATATTGTTGTCGGTTTTGTGATTTTTGCCATTGTGACAATCGTCCAGTTTATTGTGATAACCAAAGGTTCGGAGCGGGTGGCGGAAGTGGCGGCCCGCTTCTCACTCGACGGTATGCCGGGTAAACAGATGAGCATTGATGCAGATCTGAAATCCGGGCTTATTGATAACGAAGAAGTGCGCAAACGCCGTAAAGAACTGGAGCAGGAAAGTCAGATGTATGGCGCGTTTGATGGCGCGATGAAATTTATCAAAGGCGATGCGATCGCCGGAATTGTCATCATTTTCGTGAATTTTGCAGGTGGGATCGGGATCGGTGTTGCCCAGATGTCGATGCCGTTCAGTGAGGCGCTGAGTACGTATACTCTGCTGACTATCGGAGACGGACTGGTCGCGCAGATCCCGGCATTACTGATCGCAATAAGTGCAGGTTTTATTGTGACGCGGGTCAGCGGTACAAATCAGAACTTAGGTGCAAATATTGTCAGGGAGCTGTTTTCTCACGATTTTACCCTGCTGGTAACGGCTGTTCTGGCGTTGTGCATGGGGATGCTGCCGGGGTTTCCTGCCGGTATTTTTGGTTTGCTGGGCGGAGGCTTGCTGGTTTTTTATGTGTCACGGATGCGTCAGAGAAAACGGCAGGATGCTGCGGCACAAAAAGAGGGTTGTACTAATGCGGTCATGCAGGAAGCGCAACCTTCCTCTGAAAACACGTTTGTCTCCCGCGGATTGACGGCTGAAAATAATGAGGCGATCCCGCTGATTATTACGCTTCATGCCTCTTATCAGACCTTATTTGAAACAAAAAATATTATCGCCTGGCTGCAGGAAGAGTTTGCCTTTCGCTACGGTTTTTTTCTGTCCGGTATCATTATGAATTACAGCCATGATGTGTCTGTGTATCAATCTATTGTTTTAATTAATGAAATTCAATCCGGCACCATCAATTGTTATCCGGATAAATATAAAATTATTAAGGAAAACGGGGCGCTTGATTCACTGAACATTGAACCGGTTGTTATCGAGCTGAAAAATGGCAGAAAAACCTACTGGGCAGATAAAAAACAGTGTGAATTATGTCATGCATCAGGAATGGAAACTGAGCCGGGAATTACTGTATTTTTCAATGAATTCAGCCGGATAATGACACGGCACATCCAGGAACTGCTTGGGATCCAGGAAACGAAAACGCTTCTGGATAATATCGAAAATAAATATCCGGAACTGCTGAAAGAGTGTTACCGCTATTTGTCGGTACAGCGGGTCGCGGATGTTTTCCAGCGGCTGATTTCAGAGCAGATATCTATCCGCAATATTAAAACTATTCTTGGTGCGCTGGTGCAGTGGGGGCAGAAAGAGAAAGATACGCTGATATTGGTAGAACATGTCCGCAGCCAGCTTGCCCGCTATATTTCTGATCGCTTTACCCGTAATCAGGTATTGCATGCTGTCGTTCTGTCGAATCCGGTGGAAGAGATGGTTCGTCAGGGGATCCGCCAGTCGGCGGCGGGTACTTTTATTAATCTTGAACCGGCACAGCTCGATCATTTCTATGATGCGATGTCTGTGGTGATGGAGCCGCTGCGTGAGCAGCAGGATATCGTATTGCTGACGGCTATGGATATCCGTCGTTTTGTCAAAAAACTGATTGAACTTCACTACCCTGACGTTGCTGTGCTGTCATTTTCAGAAATTGTACCCACGACTCAGGTATCGGTAATTGAGTCTGTTTAAATCAAAGGAAAAGGAAATAAAAGATGGATTTTGCAACCCTGGTAACAGAA