Homologs in group_317

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09340 FBDBKF_09340 41.1 Morganella morganii S1 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
EHELCC_10070 EHELCC_10070 41.1 Morganella morganii S2 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
NLDBIP_10415 NLDBIP_10415 41.1 Morganella morganii S4 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
LHKJJB_10940 LHKJJB_10940 41.1 Morganella morganii S3 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
HKOGLL_14000 HKOGLL_14000 41.1 Morganella morganii S5 escV EscV/YscV/HrcV family type III secretion system export apparatus protein
F4V73_RS10625 F4V73_RS10625 40.4 Morganella psychrotolerans - EscV/YscV/HrcV family type III secretion system export apparatus protein
PMI_RS13275 PMI_RS13275 41.0 Proteus mirabilis HI4320 - EscV/YscV/HrcV family type III secretion system export apparatus protein

Distribution of the homologs in the orthogroup group_317

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_317

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69956 0.0 897 64 3 704 3 lcrD Low calcium response locus protein D Yersinia pseudotuberculosis serotype I (strain IP32953)
P69955 0.0 897 64 3 704 3 lcrD Low calcium response locus protein D Yersinia pestis
A1JU76 0.0 895 64 2 697 3 lcrD Low calcium response locus protein D Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P0C2V3 0.0 894 64 3 704 1 lcrD Low calcium response locus protein D Yersinia enterocolitica
P35654 2.55e-174 519 40 8 712 3 hrpI Harpin secretion protein HrpI Erwinia amylovora
P0A1I3 7.92e-169 503 41 8 694 1 invA Invasion protein InvA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1I4 7.92e-169 503 41 8 694 3 invA Invasion protein InvA Salmonella typhi
P55726 2.69e-167 500 39 6 679 3 NGR_a00530 Probable translocation protein y4yR Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P74856 8.35e-167 498 41 8 684 1 ssaV Secretion system apparatus protein SsaV Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
D0ZWU0 8.35e-167 498 41 8 684 3 ssaV Secretion system apparatus protein SsaV Salmonella typhimurium (strain 14028s / SGSC 2262)
B5FII7 8.35e-167 498 41 8 684 3 ssaV Secretion system apparatus protein SsaV Salmonella dublin (strain CT_02021853)
P0A1I6 1.18e-166 498 40 7 702 3 mxiA Protein MxiA Shigella sonnei
P0A1I5 1.18e-166 498 40 7 702 1 mxiA Protein MxiA Shigella flexneri
P35655 3.15e-165 494 40 12 715 3 hrpI Hypersensitivity response secretion protein HrpI Pseudomonas syringae pv. syringae
P35656 8.05e-164 491 41 7 680 3 hrcV Hypersensitivity response secretion protein HrcV Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
P80150 2.15e-159 478 42 9 684 3 hrpC2 Protein hrpC2 Xanthomonas euvesicatoria
D3GS80 3.53e-118 373 32 11 696 3 lfhA Putative flagellar export/assembly protein LfhA Escherichia coli O44:H18 (strain 042 / EAEC)
P76298 2.62e-117 370 36 12 688 3 flhA Flagellar biosynthesis protein FlhA Escherichia coli (strain K12)
P57335 4.27e-117 370 33 12 686 3 flhA Flagellar biosynthesis protein FlhA Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q56887 8.33e-117 369 36 12 687 3 flhA Flagellar biosynthesis protein FlhA Yersinia enterocolitica
Q8K9S0 1.54e-113 361 33 12 699 3 flhA Flagellar biosynthesis protein FlhA Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P35620 1.64e-112 358 36 8 697 1 flhA Flagellar biosynthesis protein FlhA Bacillus subtilis (strain 168)
O06758 3.46e-112 358 32 11 729 1 flhA Flagellar biosynthesis protein FlhA Helicobacter pylori (strain ATCC 700392 / 26695)
P40729 3.72e-112 357 36 13 696 1 flhA Flagellar biosynthesis protein FlhA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9ZM40 9.77e-111 355 32 11 729 3 flhA Flagellar biosynthesis protein FlhA Helicobacter pylori (strain J99 / ATCC 700824)
Q51910 5.19e-109 349 36 12 683 3 flhA Flagellar biosynthesis protein FlhA Proteus mirabilis
O67265 1.49e-108 347 33 10 700 3 flhA Flagellar biosynthesis protein FlhA Aquifex aeolicus (strain VF5)
Q89AN5 1.37e-105 340 31 12 699 3 flhA Flagellar biosynthesis protein FlhA Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8YDK9 1.61e-100 327 33 12 702 1 flhA Flagellar biosynthesis protein FlhA Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q03845 1.45e-93 308 33 9 697 3 flhA Flagellar biosynthesis protein FlhA Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q56338 7.46e-93 307 31 10 710 3 flhA Flagellar biosynthesis protein FlhA Treponema pallidum (strain Nichols)
Q44909 7.71e-89 296 31 12 712 3 flhA Flagellar biosynthesis protein FlhA Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q47153 5.49e-81 272 29 8 591 5 lfhA Putative truncated flagellar export/assembly protein LfhA Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08300
Feature type CDS
Gene sctV
Product type III secretion system export apparatus subunit SctV
Location 1720778 - 1722937 (strand: -1)
Length 2160 (nucleotides) / 719 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_317
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00771 FHIPEP family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4789 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretory pathway, component EscV

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG041828 type III secretion system export apparatus subunit SctV VF1288 Effector delivery system

Protein Sequence

MADPRSLLLRIAGRQDIFLALLLLAIIFMMILPLPDFMLDILIAINMMISITLLMMAVYIRSPLQFSAFPVVLLVTTLFRLALAVSTTRMILLEADAGQIVATFGEFVVGGNLVVGIVIFLIITVVQFLVITKGAERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDMDEARERRQKVEKESQMFGSMDGAMKFIKGDAIAGLVIICVNILGGLAIGTGQKGMAAGDALQLYSILTVGDGMVSQIPALLIAVTSGIIVTRVSSEDSADLGNDIGRQITGQPQALQVGGFLLFLFGMVPGFPVLTFMILALILTGGGYLLKRRIRDQAGEQEQSLSAAVAGGAGAPVLRSANQAAKSGNSDDALAEPETFALTVPLLMEFSTSLHDRLYADDFNQALVQLRRSLYLSLGVPFPGVYLHFSEHIPADSYRILLQEVPVGEGLLPEDKLLVREEEKQLTMLGIVYEKGEAWFDGSPAYWIERKGAERAEKTGLRCLSSMAIIKAHLAFILQKYAADFIGIQETRYLLEQMEGSFSELVREAQRVVPLYKMTDVLQRLVAEDISIRNMRTILEALTAWGQNEKDIIMLTEYVRGELSRYICHKYSNGNHVLPAFLYDHELEDLIRSHIRQTISGSYLALPPMVHETLMAAMKAMLGDLQKMMNKPVLIVSRDIRRYVKRFIEQEFAVLPVLSYQELLPTMNIQPLGRVKIDEVINSQMDNDIK

Flanking regions ( +/- flanking 50bp)

TAGCGAAGCGCTGGAGGTCTATTACCGTTATCTGATTAAACGGGTGTGCTGTGGCTGATCCCCGTTCATTGCTTCTGCGTATTGCCGGCCGGCAGGATATTTTTCTCGCACTGTTATTGCTGGCTATTATTTTTATGATGATCCTGCCGCTGCCGGATTTTATGCTCGATATTCTGATTGCCATCAACATGATGATATCAATCACATTACTGATGATGGCGGTGTATATCCGGTCACCATTACAATTTTCTGCATTTCCGGTTGTTCTGCTGGTAACTACGCTGTTCCGCCTGGCGCTGGCGGTAAGTACAACGCGGATGATCCTGCTGGAAGCCGATGCCGGGCAGATTGTGGCGACATTTGGTGAATTTGTTGTCGGTGGTAATCTGGTGGTGGGCATTGTGATTTTCCTTATTATCACGGTGGTGCAGTTTCTGGTGATAACCAAAGGTGCTGAGCGTGTGGCCGAGGTTAGTGCCCGGTTTTCCCTTGATGCGATGCCGGGCAAACAGATGAGCATTGATGGTGATATGCGCGCAGGCGTTATTGACATGGATGAAGCCCGCGAGCGGCGTCAAAAAGTGGAAAAAGAGAGTCAGATGTTCGGTTCGATGGATGGTGCAATGAAATTCATCAAGGGCGATGCTATCGCCGGACTGGTGATTATCTGTGTCAATATTCTCGGCGGGCTGGCTATCGGCACAGGACAAAAAGGAATGGCGGCGGGGGATGCCCTGCAACTCTACAGCATTCTTACTGTCGGTGACGGAATGGTCTCTCAGATCCCCGCATTATTAATTGCGGTTACGTCAGGTATTATTGTTACCCGTGTTTCTTCCGAAGATTCCGCGGATCTCGGGAATGATATCGGGCGTCAGATAACCGGACAGCCGCAGGCTTTGCAGGTCGGTGGCTTTTTATTGTTCCTGTTTGGTATGGTTCCCGGATTTCCGGTACTGACATTTATGATCCTGGCGCTGATATTAACCGGCGGAGGATACCTGTTAAAGCGCCGGATACGGGATCAGGCAGGGGAGCAGGAACAATCATTGAGTGCAGCGGTGGCCGGTGGTGCCGGAGCCCCTGTGCTGCGTTCGGCAAATCAGGCGGCAAAATCCGGCAACAGTGATGATGCACTGGCTGAGCCGGAAACATTCGCACTGACTGTACCGTTACTGATGGAATTCAGCACATCATTACATGACAGACTGTATGCCGATGATTTTAATCAGGCTTTAGTACAGCTGCGCCGCAGTCTCTATCTCTCACTGGGAGTGCCGTTTCCCGGTGTTTATCTGCATTTTTCTGAGCATATCCCGGCTGATTCTTATCGGATCTTATTACAGGAGGTTCCGGTCGGAGAGGGGCTTTTACCGGAAGATAAGTTATTAGTGAGAGAAGAGGAGAAGCAACTGACCATGCTCGGTATTGTGTATGAGAAAGGCGAAGCATGGTTTGATGGTTCACCGGCTTACTGGATTGAGCGCAAGGGCGCTGAGCGTGCGGAAAAAACTGGTTTACGTTGTTTATCGTCTATGGCGATTATTAAAGCACACCTGGCGTTTATATTACAAAAATACGCGGCTGATTTTATTGGTATTCAGGAAACCCGCTATTTACTTGAACAGATGGAAGGAAGTTTCAGTGAGTTGGTCAGGGAAGCCCAGCGGGTGGTTCCGCTCTATAAAATGACGGATGTTCTGCAACGGCTGGTGGCGGAAGATATTTCTATCCGTAATATGCGCACCATTCTGGAAGCACTGACTGCGTGGGGACAGAATGAAAAAGATATTATTATGCTGACTGAATATGTGCGCGGTGAACTGAGTCGCTATATTTGTCACAAATACAGCAATGGTAATCATGTTCTGCCGGCCTTTTTATATGATCACGAACTGGAAGACCTTATCCGCAGTCATATCCGGCAGACTATTTCCGGTAGTTATCTGGCGTTGCCACCAATGGTGCATGAAACATTAATGGCGGCAATGAAAGCTATGCTGGGTGATTTACAAAAAATGATGAATAAACCAGTGCTTATTGTATCAAGGGATATCCGCCGTTATGTAAAACGGTTTATTGAACAGGAATTTGCGGTATTACCGGTTCTTTCTTATCAGGAATTACTGCCAACGATGAACATTCAGCCTCTTGGCAGAGTGAAAATAGATGAAGTTATAAACTCGCAGATGGATAATGACATAAAATAAGGGGTTTTTACCTTATTATTCTTTGCATGGAAAACGAAAAAATAATAAAA