COG4789


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4789, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type III secretory pathway, component EscV
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG4789 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_317 FBDBKF_09340 98203 100263 -1 escV EscV/YscV/HrcV family type III secretion system export apparatus protein Morganella morganii S1
1 group_317 EHELCC_10070 45841 47901 1 escV EscV/YscV/HrcV family type III secretion system export apparatus protein Morganella morganii S2
2 group_317 NLDBIP_10415 24112 26172 1 escV EscV/YscV/HrcV family type III secretion system export apparatus protein Morganella morganii S4
3 group_317 LHKJJB_10940 165356 167416 -1 escV EscV/YscV/HrcV family type III secretion system export apparatus protein Morganella morganii S3
4 group_317 HKOGLL_14000 98657 100717 -1 escV EscV/YscV/HrcV family type III secretion system export apparatus protein Morganella morganii S5
5 group_317 F4V73_RS08300 1720778 1722937 -1 sctV type III secretion system export apparatus subunit SctV Morganella psychrotolerans
6 group_317 F4V73_RS10625 254964 257024 1 EscV/YscV/HrcV family type III secretion system export apparatus protein Morganella psychrotolerans
7 group_317 PMI_RS13275 2944792 2946891 -1 EscV/YscV/HrcV family type III secretion system export apparatus protein Proteus mirabilis HI4320