Homologs in group_3040

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18140 FBDBKF_18140 75.8 Morganella morganii S1 fimA Pilin (type 1 fimbrial protein)
EHELCC_16840 EHELCC_16840 75.8 Morganella morganii S2 fimA Pilin (type 1 fimbrial protein)
NLDBIP_17610 NLDBIP_17610 75.8 Morganella morganii S4 fimA Pilin (type 1 fimbrial protein)
LHKJJB_17530 LHKJJB_17530 75.8 Morganella morganii S3 fimA Pilin (type 1 fimbrial protein)
HKOGLL_17345 HKOGLL_17345 75.8 Morganella morganii S5 fimA Pilin (type 1 fimbrial protein)

Distribution of the homologs in the orthogroup group_3040

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3040

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76500 5.45e-10 58 25 4 160 2 yfcQ Uncharacterized fimbrial-like protein YfcQ Escherichia coli (strain K12)
P42187 0.000513 42 27 6 139 1 prsF Minor fimbrial protein PrsF Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10345
Feature type CDS
Gene -
Product fimbrial protein
Location 179886 - 180371 (strand: -1)
Length 486 (nucleotides) / 161 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3040
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MKLFSAALLLACITVPVYAGAAHSSADIIITGKLVPPPPCRVNNDEEILVDFQRVQIKSLEKADARRDVDIPFVCEQESADFKYYLTVDGPRAQFNNKLIKTNLSNLAFNIELTGTKLDLGKAQLVNSRHLTLTVVLTKNPNGELSPGHFSGTGTVTMEYF

Flanking regions ( +/- flanking 50bp)

ACTTCAGTGCAACTGCAACTATCCATATTGAATACGAATAAGGCGCTGTGATGAAACTATTTTCCGCTGCTCTGCTTCTGGCATGTATAACCGTACCGGTATACGCGGGTGCGGCTCACAGTTCTGCCGACATCATTATCACCGGAAAACTGGTGCCACCACCGCCCTGCAGGGTCAATAATGATGAAGAGATTCTGGTTGATTTTCAGCGTGTACAGATAAAATCGCTGGAAAAAGCAGATGCCCGCAGGGATGTGGATATCCCCTTTGTCTGTGAGCAGGAAAGCGCTGATTTTAAATACTATCTGACCGTAGACGGACCGCGCGCCCAGTTCAATAATAAGCTGATTAAAACCAACCTGAGCAATCTGGCATTCAATATCGAACTGACAGGAACAAAGCTGGATTTAGGTAAAGCGCAGTTGGTTAACAGCCGTCATCTGACACTGACGGTAGTTTTGACAAAAAACCCGAACGGGGAGCTGTCGCCCGGTCACTTTAGCGGAACCGGTACTGTGACTATGGAGTATTTCTGATGATATTTCGTCCGTCTGCTCTCTGTGCGCTGATATTCAGTGCCGCACTC