Homologs in group_190

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08580 FBDBKF_08580 93.2 Morganella morganii S1 sfsB putative transcriptional regulator, lambda repressor-like DNA-binding domain
EHELCC_12945 EHELCC_12945 93.2 Morganella morganii S2 sfsB putative transcriptional regulator, lambda repressor-like DNA-binding domain
NLDBIP_13285 NLDBIP_13285 93.2 Morganella morganii S4 sfsB putative transcriptional regulator, lambda repressor-like DNA-binding domain
LHKJJB_13270 LHKJJB_13270 93.2 Morganella morganii S3 sfsB putative transcriptional regulator, lambda repressor-like DNA-binding domain
HKOGLL_11760 HKOGLL_11760 93.2 Morganella morganii S5 sfsB putative transcriptional regulator, lambda repressor-like DNA-binding domain
F4V73_RS16960 F4V73_RS16960 66.7 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS04690 PMI_RS04690 65.9 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS16930 PMI_RS16930 80.7 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_190

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_190

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACH4 1.25e-29 103 66 0 80 3 sfsB Sugar fermentation stimulation protein B Shigella flexneri
P0ACH1 1.25e-29 103 66 0 80 3 sfsB Sugar fermentation stimulation protein B Escherichia coli (strain K12)
P0ACH2 1.25e-29 103 66 0 80 3 sfsB Sugar fermentation stimulation protein B Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACH3 1.25e-29 103 66 0 80 3 sfsB Sugar fermentation stimulation protein B Escherichia coli O157:H7
P06020 5.32e-22 84 65 0 63 1 ner Negative regulator of transcription Escherichia phage Mu
P06903 3.81e-20 79 55 0 67 2 ner Negative regulator of transcription Escherichia phage D108
P46496 1.17e-11 58 40 0 67 3 nlp Mu-like prophage FluMu DNA-binding protein Ner Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09805
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 65633 - 65899 (strand: -1)
Length 267 (nucleotides) / 88 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_190
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF13693 Winged helix-turn-helix DNA-binding

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3423 Transcription (K) K Predicted transcriptional regulator, lambda repressor-like DNA-binding domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07724 Ner family transcriptional regulator - -

Protein Sequence

MDSGKSDWHPADIIASLKKRGTTLAALSRGAGLSSSTLANALSRPWPKGEWIIANFLTVHPSEIWPSRYFNSITGELLDRKIREKITN

Flanking regions ( +/- flanking 50bp)

TATTTATACCACTAACACGACATTAATCTAAAATAAAAAGGACTCAATATATGGATTCCGGTAAATCCGACTGGCACCCTGCCGATATTATCGCATCGCTGAAAAAACGGGGGACAACCCTGGCTGCGCTGTCACGGGGAGCCGGACTCAGCTCCTCAACGCTTGCAAATGCCCTTTCGCGCCCGTGGCCAAAAGGAGAATGGATCATTGCAAACTTTCTTACAGTCCATCCGTCAGAGATATGGCCCAGCCGTTATTTTAATTCTATCACAGGTGAATTATTAGATAGGAAAATAAGAGAGAAGATAACTAATTAATTTTTATATATAGTTATAAAACAATAAAACCGCTAATCATTATTAGCGGT