Homologs in group_1352

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08380 FBDBKF_08380 90.9 Morganella morganii S1 rarD EamA family transporter RarD
EHELCC_13145 EHELCC_13145 90.9 Morganella morganii S2 rarD EamA family transporter RarD
NLDBIP_13485 NLDBIP_13485 90.9 Morganella morganii S4 rarD EamA family transporter RarD
LHKJJB_13070 LHKJJB_13070 90.9 Morganella morganii S3 rarD EamA family transporter RarD
HKOGLL_11960 HKOGLL_11960 90.9 Morganella morganii S5 rarD EamA family transporter RarD
PMI_RS16625 PMI_RS16625 78.8 Proteus mirabilis HI4320 rarD EamA family transporter RarD

Distribution of the homologs in the orthogroup group_1352

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1352

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8Z3B1 5.76e-145 412 65 0 294 3 rarD Protein RarD Salmonella typhi
P27844 5.29e-144 409 65 0 292 1 rarD Protein RarD Escherichia coli (strain K12)
Q9L6P1 7.97e-144 409 65 0 294 3 rarD Protein RarD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9KVF1 1.16e-121 353 56 0 295 3 VC_0195 Uncharacterized transporter VC_0195 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9I633 1.55e-84 259 47 0 292 3 PA0485 Uncharacterized transporter PA0485 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O31859 1.25e-74 233 42 3 299 3 yojE Uncharacterized transporter YojE Bacillus subtilis (strain 168)
P83936 5.32e-72 227 41 0 291 3 rarD Protein RarD Streptomyces exfoliatus
O68827 3.17e-30 118 32 2 295 3 rarD Chloramphenicol-sensitive protein RarD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q57389 2.51e-22 97 26 6 295 3 HI_0680 Uncharacterized transporter HI_0680 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9CLF4 2.21e-16 80 25 6 298 3 PM1281 Uncharacterized transporter PM1281 Pasteurella multocida (strain Pm70)
P44579 2.26e-14 75 26 2 209 3 HI_0223 Uncharacterized transporter HI_0223 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09580
Feature type CDS
Gene rarD
Product EamA family transporter RarD
Location 16070 - 16966 (strand: -1)
Length 897 (nucleotides) / 298 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1352
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00892 EamA-like transporter family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2962 General function prediction only (R) R Membrane protein RarD, contains two EamA domains, drug/metabolite transporter family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05786 chloramphenicol-sensitive protein RarD - -

Protein Sequence

MSQQQTVKGVLCALGAYFIWGIAPVYFKMIKEVPADEILTHRVIWSFFFMILLITVSRQWPRIRLILRQPKKLLILAVTACTIASNWLIYIWAVNHDHMLEASLGYFINPLVNVLFGMLFLGERFRRLQWFAVSLACTGVLIQLWQFGTVPVIGLSLAMTFGVYGLLRKKLGVDAQGGMLIETLWLLPVACVYLLFFADSATSNMTLNPLTLNLLLIAAGIITTVPLLLFTEAANHLRLSTLGFFQYIGPTLMFVLATMVYGEAISTERLITFAFIWAGLIVFTLDALYTQRYRYRKA

Flanking regions ( +/- flanking 50bp)

GTCACCCCGACGCGGTGCTTTCTCTCTTTTTTATTCAGACTTGGACTATCATGAGCCAGCAACAGACAGTAAAAGGCGTCCTTTGTGCTCTCGGCGCTTACTTTATCTGGGGAATAGCCCCGGTTTATTTCAAAATGATCAAAGAAGTCCCCGCAGATGAAATCCTGACACACCGGGTCATCTGGTCATTCTTTTTTATGATCCTGCTTATCACTGTGTCGCGCCAGTGGCCACGCATCCGCCTGATTTTGCGTCAGCCGAAAAAGCTGCTGATCCTCGCGGTTACCGCCTGTACCATTGCGTCGAACTGGCTGATTTATATCTGGGCGGTGAACCATGATCATATGCTGGAAGCCAGCCTGGGATACTTTATTAATCCGCTGGTAAACGTGCTGTTCGGGATGCTTTTCCTGGGTGAACGCTTCCGCCGTCTGCAATGGTTTGCGGTTTCTCTCGCCTGCACCGGCGTGCTTATCCAGCTCTGGCAGTTCGGAACAGTGCCGGTCATCGGGCTGAGCCTGGCAATGACATTCGGCGTATATGGCTTACTGCGTAAAAAACTGGGCGTGGATGCACAAGGCGGTATGCTGATTGAAACCCTGTGGCTGCTGCCGGTTGCCTGTGTTTATCTGCTTTTCTTCGCCGACAGTGCCACCAGCAATATGACACTCAATCCGCTGACACTGAATCTGCTGCTGATTGCTGCCGGTATTATCACCACTGTACCACTGCTGCTGTTTACAGAAGCAGCTAATCATCTGCGCCTCTCTACGCTGGGCTTTTTCCAGTATATCGGACCGACACTGATGTTTGTTCTGGCGACAATGGTGTACGGTGAGGCGATTTCAACGGAACGGTTAATCACATTTGCCTTTATCTGGGCGGGTCTGATTGTCTTCACACTGGATGCACTCTATACCCAGCGCTACCGCTACAGAAAAGCGTAATTTATCATGCCGCACTGATACTTGTGATTAGTGCGGCAGTCGGTGAAAAA