Orthogroup:group_1408


Homologs in group_1408

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08695 FBDBKF_08695 Morganella morganii S1 pnp polyribonucleotide nucleotidyltransferase
EHELCC_12830 EHELCC_12830 Morganella morganii S2 pnp polyribonucleotide nucleotidyltransferase
NLDBIP_13170 NLDBIP_13170 Morganella morganii S4 pnp polyribonucleotide nucleotidyltransferase
LHKJJB_13385 LHKJJB_13385 Morganella morganii S3 pnp polyribonucleotide nucleotidyltransferase
HKOGLL_11645 HKOGLL_11645 Morganella morganii S5 pnp polyribonucleotide nucleotidyltransferase
F4V73_RS09915 F4V73_RS09915 Morganella psychrotolerans pnp polyribonucleotide nucleotidyltransferase
PMI_RS17045 PMI_RS17045 Proteus mirabilis HI4320 pnp polyribonucleotide nucleotidyltransferase

Distribution of group_1408 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1408 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1408

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1408.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pnp 7

Product

# Product Occurence
1 polyribonucleotide nucleotidyltransferase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1185 7 J Translation, ribosomal structure and biogenesis (J) Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00962 7 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] RNA degradation -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00013 7 KH domain
PF00575 7 S1 RNA binding domain
PF01138 7 3' exoribonuclease family, domain 1
PF03725 7 3' exoribonuclease family, domain 2
PF03726 7 Polyribonucleotide nucleotidyltransferase, RNA binding domain

Annotations of the 505 SwissProt hits

Annotation Number of occurrences
Polyribonucleotide nucleotidyltransferase 501
Polyribonucleotide nucleotidyltransferase 1 1
Polyribonucleotide nucleotidyltransferase 2 1
Polyribonucleotide nucleotidyltransferase 3 1
Polyribonucleotide nucleotidyltransferase 4 1

Protein length

Min length 709
Max length 718
Mean length (sd) 716.7 (3.4)
Median length 718.0

Protein length distribution