Homologs in group_1408

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08380 FBDBKF_08380 100.0 Morganella morganii S1 rarD EamA family transporter RarD
EHELCC_13145 EHELCC_13145 100.0 Morganella morganii S2 rarD EamA family transporter RarD
LHKJJB_13070 LHKJJB_13070 100.0 Morganella morganii S3 rarD EamA family transporter RarD
HKOGLL_11960 HKOGLL_11960 100.0 Morganella morganii S5 rarD EamA family transporter RarD
F4V73_RS09580 F4V73_RS09580 90.9 Morganella psychrotolerans rarD EamA family transporter RarD
PMI_RS16625 PMI_RS16625 79.8 Proteus mirabilis HI4320 rarD EamA family transporter RarD

Distribution of the homologs in the orthogroup group_1408

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1408

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8Z3B1 9.6e-150 424 67 0 294 3 rarD Protein RarD Salmonella typhi
Q9L6P1 2.27e-148 421 67 0 294 3 rarD Protein RarD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P27844 1.34e-146 416 66 0 296 1 rarD Protein RarD Escherichia coli (strain K12)
Q9KVF1 4.04e-120 349 54 1 297 3 VC_0195 Uncharacterized transporter VC_0195 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9I633 1.59e-84 258 47 0 293 3 PA0485 Uncharacterized transporter PA0485 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O31859 1.7e-75 236 43 2 295 3 yojE Uncharacterized transporter YojE Bacillus subtilis (strain 168)
P83936 1.89e-73 231 41 2 297 3 rarD Protein RarD Streptomyces exfoliatus
O68827 1.38e-30 119 31 2 295 3 rarD Chloramphenicol-sensitive protein RarD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q57389 3.3e-21 94 26 5 295 3 HI_0680 Uncharacterized transporter HI_0680 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9CLF4 5.11e-17 82 26 4 295 3 PM1281 Uncharacterized transporter PM1281 Pasteurella multocida (strain Pm70)
P44579 1.36e-12 70 25 1 210 3 HI_0223 Uncharacterized transporter HI_0223 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_13485
Feature type CDS
Gene rarD
Product EamA family transporter RarD
Location 111500 - 112396 (strand: 1)
Length 897 (nucleotides) / 298 (amino acids)
In genomic island -

Contig

Accession ZDB_528
Length 162442 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1408
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00892 EamA-like transporter family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2962 General function prediction only (R) R Membrane protein RarD, contains two EamA domains, drug/metabolite transporter family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05786 chloramphenicol-sensitive protein RarD - -

Protein Sequence

MSQQQTVKGVLCALGAYFIWGIAPVYFKLIQQVPADEILTHRIIWSFFFMILLITVSRQWPRIRQIIRQPKKIMILALTACIIASNWLIYIWAVNHNHMLEASLGYFINPLVNVLFGMLFLGERFRRMQWFAVCLAFTGVLIQLWQFGTVPVIGLSLAMTFGLYGLLRKKLGVDAQGGMLVETLWLLPVAGIYLLFFANSATSNMTMNSLTLNLLLIAAGIITTVPLLLFTEAANHLRLSTLGFFQYIGPTLMFVLATTAYGEAISAERLVTFAFIWAGLIVFTLDALYTQRHRYKKA

Flanking regions ( +/- flanking 50bp)

CCGCGCCGGCAGGCATCTTCTTTTCTTCTTTCTTTCAGACTTGGACTATCATGAGCCAGCAACAGACCGTAAAAGGCGTCCTTTGTGCTCTCGGCGCTTACTTTATCTGGGGTATTGCCCCTGTGTATTTCAAACTGATCCAACAGGTGCCTGCGGATGAGATCCTGACACACCGGATTATCTGGTCATTCTTTTTTATGATCCTGCTGATCACCGTGTCACGCCAGTGGCCGCGTATCCGCCAGATTATCCGCCAGCCGAAGAAGATCATGATCCTCGCGCTGACCGCCTGTATTATCGCCTCTAACTGGCTGATCTATATCTGGGCGGTGAACCACAACCATATGCTGGAAGCGAGTCTCGGGTACTTTATTAACCCGCTGGTCAACGTCCTGTTCGGAATGCTCTTTCTCGGTGAGCGTTTCCGCCGTATGCAATGGTTTGCCGTGTGTCTCGCCTTTACCGGCGTGCTGATCCAGCTCTGGCAGTTCGGTACTGTGCCGGTGATCGGGCTGAGTCTGGCCATGACATTCGGCCTGTATGGTCTGCTGCGCAAAAAACTGGGGGTGGATGCCCAGGGCGGAATGCTGGTGGAAACCCTGTGGCTGCTGCCGGTTGCGGGAATTTATCTGCTTTTCTTTGCCAACAGTGCCACCAGCAATATGACCATGAACAGCCTGACGCTGAATCTGCTGCTGATTGCCGCCGGGATTATCACCACCGTGCCGCTGCTGCTGTTTACCGAGGCCGCTAACCATCTGCGTCTCTCCACGCTCGGCTTCTTCCAGTACATCGGTCCGACCCTGATGTTTGTGCTGGCGACCACCGCATATGGCGAGGCTATTTCCGCCGAACGGCTGGTAACCTTTGCCTTTATCTGGGCGGGACTGATTGTCTTTACCCTGGATGCACTGTACACCCAGCGCCACCGCTACAAAAAAGCGTGATATCCTGTGAGACAGCGCCGGATCTGCCGGCGCTGTCACCGGGAGGATAA