COG2962


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2962, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Membrane protein RarD, contains two EamA domains, drug/metabolite transporter family
Function(s) descr. General function prediction only (R)

Occurence in the database

COG2962 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1288 FBDBKF_07825 91393 92301 1 rarD EamA family transporter RarD Morganella morganii S1
1 group_1352 FBDBKF_08380 51329 52225 -1 rarD EamA family transporter RarD Morganella morganii S1
2 group_1352 EHELCC_13145 111500 112396 1 rarD EamA family transporter RarD Morganella morganii S2
3 group_1288 EHELCC_13655 65587 66495 1 rarD EamA family transporter RarD Morganella morganii S2
4 group_1352 NLDBIP_13485 111500 112396 1 rarD EamA family transporter RarD Morganella morganii S4
5 group_1288 NLDBIP_14100 86462 87370 1 rarD EamA family transporter RarD Morganella morganii S4
6 group_1288 LHKJJB_08750 72379 73287 -1 rarD EamA family transporter RarD Morganella morganii S3
7 group_1352 LHKJJB_13070 50047 50943 -1 rarD EamA family transporter RarD Morganella morganii S3
8 group_1288 HKOGLL_08300 72379 73287 -1 rarD EamA family transporter RarD Morganella morganii S5
9 group_1352 HKOGLL_11960 111500 112396 1 rarD EamA family transporter RarD Morganella morganii S5
10 group_1352 F4V73_RS09580 16070 16966 -1 rarD EamA family transporter RarD Morganella psychrotolerans
11 group_1288 F4V73_RS13220 265306 266214 -1 rarD EamA family transporter RarD Morganella psychrotolerans
12 group_1288 PMI_RS10780 2373980 2374891 -1 rarD EamA family transporter RarD Proteus mirabilis HI4320
13 group_1352 PMI_RS16625 3664522 3665415 -1 rarD EamA family transporter RarD Proteus mirabilis HI4320