Homologs in group_3730

Help

2 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS08970 F4V73_RS08970 45.7 Morganella psychrotolerans - HlyD family efflux transporter periplasmic adaptor subunit
PMI_RS10005 PMI_RS10005 28.6 Proteus mirabilis HI4320 - HlyD family type I secretion periplasmic adaptor subunit

Distribution of the homologs in the orthogroup group_3730

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3730

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7ANN5 3.46e-35 137 27 11 438 1 prsE Type I secretion system membrane fusion protein PrsE Rhizobium meliloti (strain 1021)
Q03025 1.78e-31 127 27 9 418 3 aprE Alkaline protease secretion protein AprE Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P23597 2.42e-28 119 25 8 421 3 prtE Proteases secretion protein PrtE Dickeya chrysanthemi
P0DKX9 6.55e-27 114 25 13 419 3 cyaD Protein CyaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
J7QCA7 6.55e-27 114 25 13 419 3 cyaD Protein CyaD Bordetella pertussis (strain ATCC 9797 / DSM 5571 / CCUG 30873 / LMG 14455 / NCTC 10739 / 18323)
P06739 2.47e-25 110 28 17 437 1 hlyD Hemolysin secretion protein D, plasmid Escherichia coli
P16534 5.63e-25 109 25 14 435 3 lktD Leukotoxin secretion protein D Mannheimia haemolytica
P09986 8.42e-25 109 28 19 441 1 hlyD Hemolysin secretion protein D, chromosomal Escherichia coli
P55125 6.94e-24 106 25 14 430 3 lktD Leukotoxin secretion protein D Pasteurella haemolytica-like sp. (strain 5943B)
P26761 3.18e-23 104 25 11 427 3 apxID RTX-I toxin determinant D Actinobacillus pleuropneumoniae
Q08633 1.79e-20 96 24 14 429 3 apxIIID RTX-III toxin determinant D Actinobacillus pleuropneumoniae
P18790 8.6e-19 91 25 15 434 1 ltxD Leukotoxin export protein LtxD Aggregatibacter actinomycetemcomitans

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09450
Feature type CDS
Gene -
Product HlyD family type I secretion periplasmic adaptor subunit
Location 1992883 - 1994106 (strand: -1)
Length 1224 (nucleotides) / 407 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3730
Orthogroup size 3
N. genomes 2

Actions

Genomic region

Domains

PF13437 HlyD family secretion protein
PF13533 Biotin-lipoyl like

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1566 Defense mechanisms (V) V Multidrug resistance efflux pump EmrA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12542 membrane fusion protein, adhesin transport system - -

Protein Sequence

MKKTKTQGAAPVPETNLRGVPFFYGGQHEPSLPRLVRLILVILGFFIILLIWAALSDVDEITKGQGKIIPSSREQVVQSLEGGILSSLEVREGAIVEKGQAIAYLDETRFESSLDESRSRYKANLIKSARLNAEVSGSEFVIPDMVKKDTALVQAEQRLYKSRKERLGQSIKGVNDSLQLYRREEMILQRLVKSGASSEVELIRLKRTISELDSKKQELHNEYVVNAREQLAESNKELEELESIMRARDDSLQRAKVVSPVRGIVKNIEVNTIGGVIAPGGKIMDIIPLDDQLIVEAKISPQDIAHIRLNDAALVKITAYDYAIYGGLEGEVILISPDTLQDEIQRDHVYYRILIRTSKDALINKAGKEFQIFPGMVAEVDIKTGSKSILRYLVKPLNRANEALRER

Flanking regions ( +/- flanking 50bp)

CAAGAACCTGATGTCCGGTACAACGACACCGGCTAAGGCAGGAAACTGAGATGAAAAAAACGAAAACTCAGGGTGCTGCCCCGGTGCCTGAAACAAACCTGCGCGGAGTCCCGTTTTTCTATGGTGGTCAGCATGAGCCGAGCCTGCCCCGTCTGGTTCGCCTGATACTGGTTATTTTAGGCTTTTTTATTATTTTACTTATCTGGGCCGCGTTGTCGGACGTGGATGAAATTACCAAGGGACAGGGGAAAATTATTCCGTCGTCCCGTGAGCAGGTTGTTCAGTCTCTTGAAGGCGGTATTCTCTCTTCACTGGAAGTCCGCGAAGGGGCAATTGTTGAAAAAGGGCAGGCTATCGCGTATCTGGATGAAACCCGCTTTGAGTCTTCTCTGGATGAGAGCCGCAGCCGCTATAAAGCCAATCTGATTAAGTCCGCCCGTCTGAATGCCGAAGTATCCGGCAGTGAATTTGTTATCCCGGATATGGTTAAAAAGGATACCGCGCTGGTACAAGCAGAGCAGCGGCTGTATAAATCACGCAAAGAGCGGCTGGGACAATCAATCAAAGGTGTTAATGATTCCCTGCAACTTTACCGCCGCGAAGAGATGATCCTGCAACGCCTGGTAAAATCCGGTGCGTCAAGTGAAGTGGAACTGATCCGCCTGAAGCGGACTATTTCCGAGCTGGATAGCAAAAAACAGGAACTGCATAATGAATATGTGGTGAATGCGCGTGAACAGCTTGCGGAGTCCAATAAAGAGCTGGAAGAGCTGGAGTCTATTATGCGTGCACGTGATGATTCATTGCAGCGTGCAAAAGTTGTTTCGCCGGTACGTGGGATTGTGAAAAACATTGAAGTGAATACCATCGGCGGGGTTATCGCGCCGGGCGGAAAAATCATGGATATTATCCCGCTGGATGATCAGCTGATTGTGGAAGCGAAAATCTCACCGCAGGATATCGCGCATATCCGCCTGAATGACGCTGCTCTGGTAAAAATCACGGCGTATGATTATGCTATTTACGGCGGACTGGAAGGTGAGGTGATACTGATTTCACCGGATACCCTCCAGGATGAAATTCAGCGTGATCATGTTTATTACCGGATACTTATCCGGACAAGCAAGGATGCGCTGATTAATAAAGCCGGTAAAGAGTTTCAGATTTTCCCGGGGATGGTTGCGGAAGTAGACATTAAAACCGGCAGTAAATCGATTCTCCGTTATCTGGTGAAACCGCTGAACCGGGCAAATGAGGCTCTGCGCGAGCGATAACGCTCCCATATACCACTATACCCCCGCGTGGTCATATCATGACACGCGGG