Homologs in group_141

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9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01310 FBDBKF_01310 23.3 Morganella morganii S1 tssG type VI secretion system baseplate subunit TssG
EHELCC_00235 EHELCC_00235 23.3 Morganella morganii S2 tssG type VI secretion system baseplate subunit TssG
NLDBIP_03225 NLDBIP_03225 23.3 Morganella morganii S4 tssG type VI secretion system baseplate subunit TssG
LHKJJB_04740 LHKJJB_04740 23.3 Morganella morganii S3 tssG type VI secretion system baseplate subunit TssG
HKOGLL_02305 HKOGLL_02305 23.3 Morganella morganii S5 tssG type VI secretion system baseplate subunit TssG
F4V73_RS00070 F4V73_RS00070 23.9 Morganella psychrotolerans tssG type VI secretion system baseplate subunit TssG
F4V73_RS02360 F4V73_RS02360 22.7 Morganella psychrotolerans tssG type VI secretion system baseplate subunit TssG
F4V73_RS16740 F4V73_RS16740 20.7 Morganella psychrotolerans tssG type VI secretion system baseplate subunit TssG
PMI_RS03665 PMI_RS03665 23.0 Proteus mirabilis HI4320 tssG type VI secretion system baseplate subunit TssG

Distribution of the homologs in the orthogroup group_141

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_141

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09400
Feature type CDS
Gene tssG
Product type VI secretion system baseplate subunit TssG
Location 1982075 - 1983091 (strand: 1)
Length 1017 (nucleotides) / 338 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_141
Orthogroup size 10
N. genomes 7

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Genomic region

Domains

PF06996 Type VI secretion, TssG

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3520 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11895 type VI secretion system protein ImpH Biofilm formation - Pseudomonas aeruginosa -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG041207 type VI secretion system baseplate subunit TssG VF1263 Effector delivery system

Protein Sequence

MSHLHHNMLSELSHWYDEAEPWNSGFVSLMRAVAAKYPDMPAIGTADRPQQEPYRLGQTPNMVFAPREIAKITHEDNLCHVDLFSLGIWGPQGAMPINFTEQAFIRMEHQDTLLRDFVNIFHHRALSLFYRSWFVSQDVATLDRKDDEKFSFYIGSLIGLVPDEICDSVLPTHARLSSSSHLIREARNPEGLVGALEYYFGIKVGLKEFTKQWIFLETSDQTKIGDLSSSLLLSEGAILGNTVQDRQHKFSLVLGPLTLEQYMRFSLWGEDLPILKEWVRNFIGFEYAWDVQLVLAPDAIPQANLDGSHQLGYAAWLPREKQDEPISGMSFDPETHLN

Flanking regions ( +/- flanking 50bp)

GGGCTGGTCGCCAAGTGGGCACCACGTCCGGGTAAGCGCGGGATCTTATAATGAGCCATTTGCACCATAATATGTTAAGCGAACTTTCGCACTGGTATGACGAAGCCGAGCCGTGGAACAGTGGTTTCGTCAGCCTGATGCGGGCGGTTGCGGCAAAATATCCGGATATGCCGGCTATCGGAACCGCAGACCGCCCCCAGCAAGAGCCTTACCGTCTGGGGCAAACCCCCAATATGGTGTTTGCCCCGCGCGAAATTGCAAAGATTACCCATGAAGATAACCTGTGCCACGTTGATCTCTTCAGTTTAGGGATCTGGGGTCCTCAGGGGGCAATGCCGATAAACTTTACCGAGCAGGCATTTATCCGCATGGAGCACCAGGACACCCTGCTTCGTGACTTCGTTAATATCTTTCATCACCGGGCGCTCTCGCTGTTTTACCGCAGTTGGTTTGTTTCACAGGATGTCGCCACACTCGATCGCAAAGATGATGAGAAGTTCTCTTTTTATATCGGATCACTCATCGGGCTGGTGCCGGATGAAATCTGTGACTCGGTTCTGCCGACACACGCCAGGCTCTCCTCGTCATCTCACCTGATCCGTGAAGCACGCAACCCCGAGGGGCTTGTCGGTGCATTGGAATACTATTTCGGGATAAAGGTCGGGCTGAAAGAATTTACCAAGCAATGGATTTTTCTGGAAACCTCAGACCAGACAAAAATAGGGGATTTAAGCTCCTCCTTACTGTTATCGGAAGGTGCCATTTTAGGCAATACCGTTCAGGACCGGCAGCATAAATTCAGTCTGGTTCTGGGTCCGTTAACATTAGAACAATATATGCGCTTCAGTTTATGGGGTGAGGATCTGCCAATCCTTAAAGAGTGGGTCCGCAACTTTATTGGTTTCGAATATGCCTGGGATGTCCAGTTAGTACTGGCGCCGGATGCAATACCACAGGCGAACCTTGATGGCAGCCACCAGTTAGGGTATGCCGCATGGCTTCCCCGTGAAAAACAGGATGAACCTATTTCGGGGATGAGTTTTGACCCCGAAACGCACCTTAACTGATTACTGATTTTCAACAGATAATGGAATATGACCGTGAGCGAAGAACTGCA