COG3520


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3520, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted component of the type VI protein secretion system
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG3520 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_548 FBDBKF_01310 253322 254347 1 tssG type VI secretion system baseplate subunit TssG Morganella morganii S1
1 group_548 EHELCC_00235 54521 55546 -1 tssG type VI secretion system baseplate subunit TssG Morganella morganii S2
2 group_548 NLDBIP_03225 624590 625615 1 tssG type VI secretion system baseplate subunit TssG Morganella morganii S4
3 group_548 LHKJJB_04740 231831 232856 1 tssG type VI secretion system baseplate subunit TssG Morganella morganii S3
4 group_548 HKOGLL_02305 54726 55751 -1 tssG type VI secretion system baseplate subunit TssG Morganella morganii S5
5 group_3719 F4V73_RS00070 18602 19576 -1 tssG type VI secretion system baseplate subunit TssG Morganella psychrotolerans
6 group_548 F4V73_RS02360 501671 502696 -1 tssG type VI secretion system baseplate subunit TssG Morganella psychrotolerans
7 group_4065 F4V73_RS07000 1453762 1454427 -1 type VI secretion system baseplate subunit TssG Morganella psychrotolerans
8 group_3719 F4V73_RS09400 1982075 1983091 1 tssG type VI secretion system baseplate subunit TssG Morganella psychrotolerans
9 group_3719 F4V73_RS16740 169898 170998 -1 tssG type VI secretion system baseplate subunit TssG Morganella psychrotolerans
10 group_548 PMI_RS03665 824593 825630 -1 tssG type VI secretion system baseplate subunit TssG Proteus mirabilis HI4320