Homologs in group_3719

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2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS09400 F4V73_RS09400 30.2 Morganella psychrotolerans tssG type VI secretion system baseplate subunit TssG
F4V73_RS16740 F4V73_RS16740 19.8 Morganella psychrotolerans tssG type VI secretion system baseplate subunit TssG

Distribution of the homologs in the orthogroup group_3719

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3719

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00070
Feature type CDS
Gene tssG
Product type VI secretion system baseplate subunit TssG
Location 18602 - 19576 (strand: -1)
Length 975 (nucleotides) / 324 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3719
Orthogroup size 3
N. genomes 1

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Genomic region

Domains

PF06996 Type VI secretion, TssG

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3520 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11895 type VI secretion system protein ImpH Biofilm formation - Pseudomonas aeruginosa -

Protein Sequence

MAADMFVPVAGLSARQDFFELLRRIAQASPGLAADGVTDGENPCRLRIIQTADTSFAPREVADIRQSVNPVSKQTELTIWCRHFGMFAPYGPLPIHITEHARTELLARRSHAFQDFSSLISRRLALFSYRAWSQLHVAAGHDKSSRNAFQQRLDQIAGITPVLSVGQHIHRVRQAFPACYLPGRSILTNLQSVLTHYFSVPVRIQAHQGMWIDDPHNTTNQRMGRLGKTRVGKRFFDIEHSLSVRIGPVGIREYHLFQRDSERLKALVAICNDFVSHRRVLDVKLLIRTSADMAGHMGHSKLGRSGWLKPDGTIRIQSLFTTAA

Flanking regions ( +/- flanking 50bp)

TATGCAACTCAATATTGACGGTGAACCACTTGCACAATGGGAGCCGACCGGTGGCTGCTGATATGTTTGTTCCTGTCGCCGGGCTCAGTGCCCGTCAGGATTTTTTTGAATTATTACGCCGGATAGCACAGGCCAGCCCCGGATTAGCGGCTGATGGTGTTACAGACGGAGAAAATCCCTGCCGTCTGCGGATAATTCAGACAGCGGATACCAGTTTTGCGCCACGGGAAGTCGCAGATATCCGCCAGTCCGTCAATCCGGTGAGTAAACAGACCGAACTGACCATCTGGTGCCGCCACTTCGGCATGTTTGCGCCTTATGGTCCGCTGCCTATTCATATAACAGAACATGCACGTACTGAACTGCTCGCCCGCCGCAGTCATGCTTTTCAGGATTTTTCATCATTAATAAGCCGCCGGCTGGCGCTGTTTTCTTACCGGGCATGGTCACAGTTGCATGTTGCTGCAGGTCATGACAAAAGCAGCCGCAACGCATTTCAGCAGCGCCTGGATCAGATAGCCGGGATAACGCCGGTACTATCTGTCGGTCAGCATATACACCGGGTCAGGCAGGCATTTCCCGCCTGTTACCTGCCCGGGCGCAGCATACTGACAAATCTTCAGTCTGTTCTTACTCACTATTTTTCTGTTCCTGTCCGCATACAGGCACATCAGGGAATGTGGATTGATGATCCGCATAATACGACGAATCAGCGTATGGGAAGGCTTGGCAAAACCCGTGTCGGTAAACGTTTTTTTGATATTGAACACAGCTTGTCTGTCCGGATAGGCCCGGTCGGTATCAGGGAATATCACTTGTTTCAGCGGGACAGTGAGCGCTTGAAAGCGCTGGTTGCCATCTGTAATGATTTTGTCTCACACCGCCGTGTGCTGGATGTGAAATTACTTATCCGGACATCTGCGGATATGGCAGGTCACATGGGTCACAGCAAACTCGGGCGCAGCGGCTGGTTAAAACCTGACGGCACCATCCGTATCCAGTCTCTTTTCACAACAGCAGCCTGATGCGATTAACACAACACACGACTAAACGTAAGGATGAGTGTTATGCCACT