Homologs in group_113

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10 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01355 FBDBKF_01355 26.0 Morganella morganii S1 tssM type VI secretion system membrane subunit TssM
EHELCC_00190 EHELCC_00190 26.0 Morganella morganii S2 tssM type VI secretion system membrane subunit TssM
NLDBIP_03270 NLDBIP_03270 26.0 Morganella morganii S4 tssM type VI secretion system membrane subunit TssM
LHKJJB_04785 LHKJJB_04785 26.0 Morganella morganii S3 tssM type VI secretion system membrane subunit TssM
HKOGLL_02260 HKOGLL_02260 26.0 Morganella morganii S5 tssM type VI secretion system membrane subunit TssM
F4V73_RS00025 F4V73_RS00025 25.7 Morganella psychrotolerans tssM type VI secretion system membrane subunit TssM
F4V73_RS02315 F4V73_RS02315 26.5 Morganella psychrotolerans tssM type VI secretion system membrane subunit TssM
F4V73_RS06970 F4V73_RS06970 19.1 Morganella psychrotolerans - ImcF-related family protein
F4V73_RS16760 F4V73_RS16760 18.1 Morganella psychrotolerans - ImcF-related family protein
PMI_RS03620 PMI_RS03620 26.6 Proteus mirabilis HI4320 tssM type VI secretion system membrane subunit TssM

Distribution of the homologs in the orthogroup group_113

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_113

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I755 3.59e-101 351 25 30 1101 3 tssM1 Type VI secretion system component TssM1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09335
Feature type CDS
Gene tssM
Product type VI secretion system membrane subunit TssM
Location 1961446 - 1965345 (strand: -1)
Length 3900 (nucleotides) / 1299 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_113
Orthogroup size 11
N. genomes 7

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Genomic region

Domains

PF06744 Type VI secretion protein IcmF C2-like domain
PF06761 Intracellular multiplication and human macrophage-killing
PF14331 IcmF-related N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3523 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component VasK

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11891 type VI secretion system protein ImpL Biofilm formation - Pseudomonas aeruginosa
Bacterial secretion system		 -

Protein Sequence

MSFWNRTFALRFTKRVLIFLFFLLLAAIIWYLGPTFGYGEIRPLEDSTSRITYIVLLAVIFVGLWCRVPCFLLGVLTVCVTFWVFSPYLLLGESYPFEETTPRLIVIGVITLATLLYCVWLLISMLRFNPEKLDRFFKGRKDDAVRVERYREVVAIINNAARYVAYTGRKISRWSHFWRPKKVVYDLPWYMMLGPKDAGKTTAILSSGQEFPLPEQLLRVSKESTPTTNCECWFTNEAIFVDTSGKYINELDENSGEWDALVKAIKKNRPLKSLNGVVVTIPVTDLMGRDKKELYALSSKFRTQLDLLRHELGVRFPVYVLITKMDMVSGFDEYFRSLTLEERDQIWGFTLPFGEKKKKSDAIVEIRDVLRNELSALESRLDKDMTARMLDEYDVTTRKRMYQLPQDFRLLADAITEFGQNVFSPSRYDDTQKFTSLRGIYFASSTQSTMQSLLNPHTIVQKWRDMASSLEGKEFITDKAEDTEDRLVQETVNGKHFFLKQLFDNFIRDRNLVRYNLALTAKYRFQTLAGHLLCILLTIWLCYALVNSYHNNRVYLDEANEKVEQVSTVVDEYLETNSDGLLAKMLSLTQDIPVLGVFDFKDPRLSYRYGLYVGFDIQEESDKIYQYFLQRWLLFSLEKMTEKSLFDAVTTDNQDIIYDKLKTYLILHGEGKFDKDYLIKSLTEEAQTTHMIENYGQTIVFVSHLEELFNDPKWNQYNSEINDRLVAAARVVLQKKPLASRLYQKVKEQAMTEAPENITLYKLSGDQLGSILEVSDETLAVNGIPGIFTNAGYHQVFKKKLTEYVKTIQSEDSWITGQKNEGRKVEIKQLDGFYMTETEEAVLKLYLQEYVATWNQFLNGIQLKKLVPDGAVGNDTTFDMYALQILSSPDSPLIDMMTQIAHETAVSVDFAKQESEMPDLSQTQAGRNLTTGRMGSVARNLKDIKTVKDALSQREKKILYDNVDRRFAALHRLVNLDTSPKPGNRVMQAGQGSDNGLIKIINMLGDQHNYLVIKESTMEDGSALPFPSEAEKRLKAESRLWPAPLKAIIMPLLGGISTKLSQQFTAQSNEAVKLELGDMCVASFQGSYPFASSEEEVSLEEFEVFFGPNGIVDAYFKENMVKLVDTTTSPWRYKREDLRGNEDKEVLRFFEQAQEIKKAFFRNGMSENISFSFTASIPALSPRILQFGMNINGTNLTYKHGPVWPKSFKWPEADSENTITMNAVSADNADNSDERVLMGEWSLLRWMDMASEQKMTSAAKQVMVYKFGDQKVSININGLNYKGKPINTMLKKFKCPTSI

Flanking regions ( +/- flanking 50bp)

CGCTGAACCGGCGTGTTGAAGTTTATGTTACCTATCTGTGAGTTTTAAAAATGTCATTCTGGAATAGAACATTTGCACTACGGTTTACAAAAAGAGTCCTGATTTTTCTCTTCTTTTTGTTATTAGCCGCCATTATATGGTACCTGGGACCGACATTCGGCTACGGAGAAATCCGTCCGCTTGAAGACAGCACATCACGGATAACGTATATCGTGCTGTTGGCTGTCATATTTGTCGGGCTATGGTGCCGTGTTCCGTGTTTCCTGCTCGGGGTACTGACGGTCTGCGTCACATTCTGGGTTTTCTCACCCTATCTGTTACTCGGCGAGTCCTATCCTTTTGAGGAGACGACTCCGCGTCTGATTGTCATCGGGGTTATCACGCTGGCGACGCTGCTGTATTGCGTCTGGCTGCTTATCTCCATGCTGCGCTTCAATCCGGAAAAACTGGATCGCTTCTTTAAAGGCAGAAAAGACGACGCAGTCCGGGTGGAACGCTACCGCGAAGTTGTTGCTATCATTAACAACGCCGCACGGTATGTCGCATACACCGGTCGCAAAATTTCCCGCTGGAGCCATTTCTGGCGTCCCAAGAAAGTAGTTTACGACCTGCCGTGGTACATGATGCTGGGTCCGAAGGACGCAGGGAAAACCACCGCTATCCTGTCATCGGGTCAGGAATTCCCGCTGCCGGAACAATTGCTGCGTGTCTCTAAAGAGAGCACCCCGACTACAAACTGTGAATGCTGGTTTACCAACGAAGCTATTTTTGTTGATACTTCCGGTAAATACATCAATGAACTTGATGAAAACAGCGGTGAGTGGGATGCCTTAGTTAAAGCCATCAAGAAAAACCGTCCGCTGAAATCACTCAACGGTGTGGTTGTGACAATTCCTGTCACTGACCTGATGGGCAGAGATAAAAAAGAGCTGTATGCATTATCGTCAAAATTCAGAACACAGCTGGATCTGCTGCGCCACGAGTTAGGTGTCCGCTTCCCGGTGTATGTGCTGATCACCAAAATGGATATGGTGTCCGGTTTTGATGAATATTTCCGGTCTCTGACACTCGAAGAACGTGATCAGATCTGGGGCTTCACACTGCCGTTCGGTGAGAAGAAGAAGAAATCTGATGCTATTGTCGAGATCCGCGATGTCCTGCGCAATGAGTTATCTGCACTGGAGAGCCGCCTCGATAAAGACATGACCGCGCGTATGCTGGATGAATATGATGTCACCACGCGTAAACGCATGTATCAGCTGCCACAGGATTTCCGTTTACTGGCGGATGCCATCACGGAGTTCGGTCAGAATGTTTTCTCGCCGTCCCGCTATGATGACACGCAGAAATTCACGTCACTGCGCGGTATCTATTTTGCCAGCAGCACGCAGTCAACAATGCAGTCACTGCTTAATCCGCACACCATTGTTCAGAAATGGCGTGACATGGCAAGCAGCCTGGAAGGTAAAGAATTTATTACCGATAAGGCTGAGGATACGGAAGATCGTCTGGTTCAGGAAACCGTTAACGGCAAGCATTTCTTCCTGAAACAGTTATTTGATAACTTTATCCGTGATCGCAATCTGGTGCGCTATAACCTGGCACTGACCGCGAAGTACCGTTTCCAGACGCTTGCCGGACATCTGTTGTGTATCCTGCTGACTATCTGGTTATGTTATGCACTGGTGAACAGTTATCATAATAACCGTGTCTATCTGGATGAAGCTAACGAGAAAGTCGAACAGGTATCGACAGTCGTGGATGAGTATCTGGAAACGAACAGCGACGGTCTGTTGGCGAAGATGTTGTCACTGACGCAGGATATTCCGGTTCTGGGTGTGTTTGACTTTAAAGATCCGCGTCTCTCTTATCGTTACGGACTGTATGTCGGGTTTGATATTCAGGAAGAATCGGACAAGATTTATCAGTATTTCCTGCAACGCTGGCTGCTTTTCTCTCTGGAAAAAATGACAGAGAAGTCCCTGTTTGATGCGGTGACGACTGATAATCAGGACATTATTTACGATAAGCTTAAAACGTATCTGATTCTGCACGGTGAAGGGAAATTTGATAAAGATTACCTGATTAAATCACTGACAGAAGAAGCACAGACAACGCATATGATTGAGAATTATGGTCAGACCATTGTCTTTGTTTCTCATCTGGAAGAATTGTTTAACGATCCGAAATGGAATCAGTACAACTCAGAGATTAATGACCGTCTTGTTGCGGCAGCCCGTGTGGTTCTGCAAAAAAAGCCGTTAGCCTCCCGCCTGTATCAAAAGGTTAAAGAACAGGCGATGACAGAGGCGCCTGAGAACATAACCTTGTATAAGCTTAGTGGTGATCAGTTAGGCAGTATTCTGGAAGTCAGCGATGAAACACTCGCAGTTAATGGTATTCCCGGCATTTTTACCAATGCCGGTTATCATCAGGTTTTTAAAAAAAAACTGACAGAGTATGTGAAAACTATCCAGTCTGAGGATAGTTGGATCACCGGACAAAAAAACGAAGGCCGTAAAGTTGAGATTAAGCAACTGGACGGCTTCTATATGACGGAAACCGAAGAAGCCGTTCTGAAGCTCTATCTTCAGGAATATGTGGCAACGTGGAATCAGTTCCTTAACGGGATCCAGTTAAAAAAACTGGTCCCGGACGGGGCGGTGGGAAACGATACAACGTTTGATATGTATGCGTTGCAAATCCTCAGCTCACCGGATTCTCCGCTGATTGACATGATGACGCAGATTGCGCATGAGACTGCGGTATCGGTTGATTTTGCAAAACAGGAATCCGAAATGCCGGATCTTTCCCAGACTCAGGCAGGCAGAAATCTGACTACCGGACGAATGGGATCGGTTGCCCGTAACCTGAAAGATATTAAAACAGTAAAAGATGCGTTATCACAGCGTGAGAAAAAGATCCTGTATGACAATGTGGATCGCCGGTTTGCCGCGCTGCACCGGTTAGTTAACCTGGATACATCACCAAAACCGGGCAACCGGGTGATGCAGGCCGGTCAGGGCAGTGATAACGGATTAATTAAAATTATCAACATGTTAGGCGACCAGCATAACTATCTGGTTATTAAAGAATCAACCATGGAAGACGGAAGTGCGCTGCCATTTCCGTCAGAAGCTGAAAAACGGTTGAAAGCGGAGTCCAGGCTCTGGCCGGCACCGCTTAAAGCGATAATCATGCCGCTGCTGGGCGGGATATCAACAAAGCTCAGCCAGCAGTTTACCGCGCAGAGTAATGAAGCAGTAAAACTTGAATTAGGCGACATGTGTGTCGCCTCTTTTCAGGGGAGCTATCCCTTTGCGAGCAGCGAAGAGGAAGTCAGTCTTGAGGAGTTCGAAGTCTTTTTCGGGCCGAACGGCATCGTTGATGCCTATTTTAAAGAGAATATGGTGAAGCTGGTTGATACCACGACTTCACCATGGCGCTATAAGCGCGAAGATCTCCGCGGAAATGAAGATAAGGAGGTTCTGCGTTTTTTCGAGCAGGCCCAGGAGATCAAAAAAGCTTTTTTTCGTAATGGGATGAGTGAAAACATATCATTTAGTTTTACCGCAAGTATTCCGGCCCTGTCGCCGAGAATATTGCAGTTTGGCATGAATATTAATGGTACGAATCTTACGTACAAACACGGGCCGGTCTGGCCAAAATCATTTAAATGGCCTGAGGCGGATTCTGAAAATACGATTACGATGAATGCCGTTTCCGCCGATAATGCCGATAATAGTGATGAGCGGGTACTCATGGGAGAGTGGTCGTTATTACGCTGGATGGATATGGCCAGTGAGCAGAAAATGACATCAGCCGCTAAACAGGTAATGGTTTATAAGTTTGGTGATCAGAAGGTCAGCATAAATATCAATGGATTGAACTATAAAGGAAAGCCGATTAATACAATGTTAAAGAAATTTAAATGTCCGACTTCTATTTAATAATAGGTATTTATAATTAAGACTGTTCGTCCACTTATTTAATTGTGGAC