Orthogroup:group_112


Homologs in group_112

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11 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01325 FBDBKF_01325 Morganella morganii S1 tssK type VI secretion system baseplate subunit TssK
EHELCC_00220 EHELCC_00220 Morganella morganii S2 tssK type VI secretion system baseplate subunit TssK
NLDBIP_03240 NLDBIP_03240 Morganella morganii S4 tssK type VI secretion system baseplate subunit TssK
LHKJJB_04755 LHKJJB_04755 Morganella morganii S3 tssK type VI secretion system baseplate subunit TssK
HKOGLL_02290 HKOGLL_02290 Morganella morganii S5 tssK type VI secretion system baseplate subunit TssK
F4V73_RS00035 F4V73_RS00035 Morganella psychrotolerans tssK type VI secretion system baseplate subunit TssK
F4V73_RS02345 F4V73_RS02345 Morganella psychrotolerans tssK type VI secretion system baseplate subunit TssK
F4V73_RS06980 F4V73_RS06980 Morganella psychrotolerans tssK type VI secretion system baseplate subunit TssK
F4V73_RS09345 F4V73_RS09345 Morganella psychrotolerans tssK type VI secretion system baseplate subunit TssK
F4V73_RS16860 F4V73_RS16860 Morganella psychrotolerans tssK type VI secretion system baseplate subunit TssK
PMI_RS03650 PMI_RS03650 Proteus mirabilis HI4320 tssK type VI secretion system baseplate subunit TssK

Distribution of group_112 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_112 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_112

Orthogroup content: 11 members

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This page summarizes the annotation of all members of the orthologous group group_112.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssK 11

Product

# Product Occurence
1 type VI secretion system baseplate subunit TssK 11

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3522 11 U Intracellular trafficking, secretion, and vesicular transport (U) Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11893 11 type VI secretion system protein ImpJ Biofilm formation - Pseudomonas aeruginosa -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF05936 11 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG035127 1 type VI secretion system baseplate subunit TssK VF1120 Effector delivery system
VFG041086 1 type VI secretion system baseplate subunit TssK VF1036 Effector delivery system
VFG041200 1 type VI secretion system baseplate subunit TssK VF1263 Effector delivery system

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Type VI secretion system baseplate component TssK1 1

Protein length

Min length 433
Max length 452
Mean length (sd) 448.1 (5.3)
Median length 450.0

Protein length distribution