Homologs in group_113

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10 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01355 FBDBKF_01355 61.0 Morganella morganii S1 tssM type VI secretion system membrane subunit TssM
EHELCC_00190 EHELCC_00190 61.0 Morganella morganii S2 tssM type VI secretion system membrane subunit TssM
NLDBIP_03270 NLDBIP_03270 61.0 Morganella morganii S4 tssM type VI secretion system membrane subunit TssM
LHKJJB_04785 LHKJJB_04785 61.0 Morganella morganii S3 tssM type VI secretion system membrane subunit TssM
HKOGLL_02260 HKOGLL_02260 61.0 Morganella morganii S5 tssM type VI secretion system membrane subunit TssM
F4V73_RS00025 F4V73_RS00025 23.1 Morganella psychrotolerans tssM type VI secretion system membrane subunit TssM
F4V73_RS02315 F4V73_RS02315 61.0 Morganella psychrotolerans tssM type VI secretion system membrane subunit TssM
F4V73_RS06970 F4V73_RS06970 17.4 Morganella psychrotolerans - ImcF-related family protein
F4V73_RS09335 F4V73_RS09335 26.6 Morganella psychrotolerans tssM type VI secretion system membrane subunit TssM
F4V73_RS16760 F4V73_RS16760 18.8 Morganella psychrotolerans - ImcF-related family protein

Distribution of the homologs in the orthogroup group_113

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_113

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I755 4.79e-61 231 23 27 1100 3 tssM1 Type VI secretion system component TssM1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03620
Feature type CDS
Gene tssM
Product type VI secretion system membrane subunit TssM
Location 811475 - 815023 (strand: -1)
Length 3549 (nucleotides) / 1182 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_113
Orthogroup size 11
N. genomes 7

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Genomic region

Domains

PF06744 Type VI secretion protein IcmF C2-like domain
PF06761 Intracellular multiplication and human macrophage-killing
PF14331 IcmF-related N-terminal domain
PF21070 Type VI secretion protein IcmF helical domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3523 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component VasK

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11891 type VI secretion system protein ImpL Biofilm formation - Pseudomonas aeruginosa
Bacterial secretion system		 -

Protein Sequence

MKLPVFSISNITSSVKKLFFADKSKIASFLLFLLALLPALLIIWIWWWGPTFRYQDSIPFSEVTTRWLATVVIVLLVVSWIGLATWRRVKKLEALKLDVELAVVDPVRQDLDFQKRYLNYWKSQFIRHLNGHTKAVYLRPWYFVLGANQSGKHSLLKNTVNPLDIAPSDNIVNEQNIALNIQCLLTDNAVLFVPNGDLLTQPANQADKPQLYHRLWGDLLNWIKTNRPRQPMNGIVLTVDTLSLLTNSKEQNSQLLADLQMRIEEIRMTFNSRLPLYIVLTKLDLLRGFDSMYQSLDVQQRNEVLGVSFNQKAKSNWKKELNHFWSQWVGQMNSALPEMMLQRAEGNQRSDLFSFVRQIEGLQHSVCTLIDALLINNEQHNICLRGVYLTSALQIGQIDDVFSQTASEQYHLPTAPLTTWPINDSHPYFTTQLFSQVLFSEPNIAAENHYWVKKHRTRLLVTTAVSFVGLIAIWNGWSHYYDKNYRAGENVLNEVKAFRAIENNAQKDTDGSLQLPVLNPLREATLAYGNHRDKNVLFSDMGLYQGQKVGPQVEQVYLQLLTDRFLPAVMSGLLNELNSADKGSEDKLEILRIMRMLEDKSGRNNGMVEDFMADYWSQLFTGQREKQLQLKAHLRYALEHTDWKQEREKGFVSATKAFMPFAGPIKNAQAELSVLSLYQRVYQALRLKANQELSAPLNLQHQIGPSFNTVFTAIDDDKLEIPQFLTRSGLLNYFIRQNDKLVELTLLDAWVLNLTTNTQYSESDRKEIQRQISEQYLSDYTAQWRNAMSNLEIRQFDSIQDEITALEQIISGEQPLRRALQVLRDNTVIPTIDENLPLDEQKTLMAEPSYRLLTRLDREFTPQTEILVSNQGENLQNLNQKLNDLHRYLLGIQNSPVPGKAALKAVSMRLNDNNRDAIFELSQMAKTLPEPLNRWVDELSVQAWNVVQKEAIRYMEVEWNENVVKQYNTYIAGRYPFNPAAKQDVPLSEFERFFKPNGTLDSFYQQNLRLFVENNLVNDSDSQSLIRADVLAQIEIANRIRETFFNAQGNLEAQYAIEPLSLSGNKRRSILNLDGQLIDYAHSRSHVTHLVWPNSMRSNIESKLTLVPLSGDKSPRSISFSGPWAQMRLVDNAKLINIKSNSFDIRFTIDGGDMTYRVIVDESNNPFFGGLFTKFRLPETLY

Flanking regions ( +/- flanking 50bp)

ATAGACAAAAAGACAGAAATAACAATGACTATGGATAGGGATCAATAATAATGAAATTACCGGTTTTCTCCATTTCAAACATTACGAGTTCGGTAAAAAAACTCTTTTTTGCTGATAAATCTAAAATTGCCTCCTTTTTGCTATTTTTATTGGCATTACTTCCCGCTTTGCTCATTATTTGGATCTGGTGGTGGGGGCCAACATTTCGTTATCAAGATTCCATACCGTTTAGCGAGGTCACCACACGTTGGTTAGCAACCGTCGTTATTGTATTGCTTGTTGTGAGTTGGATTGGTCTAGCAACATGGCGTCGAGTTAAAAAATTGGAAGCATTAAAACTTGATGTCGAATTGGCTGTAGTTGATCCGGTAAGACAAGATCTTGATTTTCAAAAACGTTATTTAAACTATTGGAAATCACAATTTATTCGCCACTTAAATGGTCATACTAAAGCGGTTTATTTACGCCCTTGGTATTTTGTTTTAGGTGCTAACCAAAGTGGAAAGCATAGCTTATTAAAAAATACGGTAAACCCATTAGATATTGCGCCTAGCGACAATATTGTTAACGAACAAAATATTGCATTAAATATTCAATGTCTATTAACCGACAATGCTGTACTTTTTGTCCCTAATGGTGATCTATTAACCCAGCCGGCAAATCAGGCTGATAAACCTCAACTTTATCACCGTTTGTGGGGCGATTTACTCAATTGGATCAAAACTAATCGCCCAAGACAACCAATGAATGGCATCGTCTTAACTGTCGATACCCTATCGTTATTAACCAATAGTAAGGAGCAAAATAGTCAGCTACTTGCTGATTTACAAATGCGTATTGAAGAAATACGCATGACATTTAATAGTCGCTTGCCTTTATATATCGTCTTAACCAAGCTAGATCTATTACGTGGTTTTGACTCAATGTATCAATCATTAGATGTTCAACAACGTAATGAAGTACTAGGTGTTTCTTTCAACCAGAAAGCAAAAAGTAATTGGAAAAAGGAATTAAATCATTTTTGGTCACAATGGGTAGGCCAAATGAACAGCGCATTACCAGAAATGATGCTACAAAGAGCAGAAGGTAACCAGCGTAGTGATCTATTTAGTTTCGTGCGCCAAATTGAAGGGTTACAACATTCTGTATGCACATTAATTGATGCATTGCTCATCAATAATGAGCAACATAATATCTGTTTAAGAGGGGTTTATTTAACTTCTGCATTGCAAATCGGTCAAATCGATGATGTGTTTAGCCAAACAGCGTCCGAACAATATCATTTACCGACAGCACCTCTTACTACATGGCCAATTAATGATAGCCACCCTTATTTTACTACCCAATTATTTAGTCAAGTGCTATTTAGTGAGCCTAATATTGCAGCAGAAAACCATTATTGGGTTAAAAAACATCGGACTCGCCTATTAGTCACCACTGCTGTTAGCTTTGTCGGCTTAATCGCAATTTGGAATGGTTGGAGCCACTATTACGACAAAAACTATCGTGCTGGAGAAAACGTTCTTAATGAGGTAAAAGCATTCCGTGCTATTGAGAACAATGCTCAGAAAGATACTGATGGTAGCCTACAATTACCGGTGCTCAATCCATTACGTGAAGCAACCTTAGCTTATGGTAATCATCGTGATAAAAATGTGCTCTTTTCTGATATGGGTCTTTACCAAGGTCAAAAAGTTGGCCCACAAGTTGAACAAGTCTATTTACAACTACTCACCGATCGTTTTTTACCTGCGGTTATGTCTGGGTTGTTAAATGAACTTAACAGTGCCGACAAAGGAAGTGAAGATAAGTTAGAGATATTGCGTATTATGCGCATGTTAGAAGATAAAAGTGGCCGTAATAATGGCATGGTAGAAGATTTTATGGCCGATTATTGGAGCCAACTGTTCACTGGTCAACGTGAAAAACAACTGCAACTAAAAGCCCATTTGCGCTATGCCCTTGAGCACACAGATTGGAAACAAGAGCGTGAAAAAGGATTTGTTTCAGCCACTAAAGCCTTTATGCCTTTTGCTGGACCTATAAAAAATGCACAAGCAGAGTTAAGTGTATTGTCACTTTATCAGCGTGTATATCAAGCCTTACGCTTAAAGGCTAATCAAGAGCTTTCAGCGCCTTTAAATTTACAACATCAAATTGGCCCAAGTTTTAATACGGTCTTTACGGCTATTGATGATGATAAATTAGAAATTCCACAATTCTTAACGCGCTCAGGGTTATTAAACTATTTTATCCGCCAAAATGATAAATTGGTCGAGCTAACATTACTTGATGCTTGGGTTCTTAATCTAACCACCAACACACAATATAGTGAAAGTGATCGTAAAGAAATTCAGCGTCAAATCAGTGAACAATATCTTAGTGACTATACGGCTCAATGGCGTAATGCCATGAGCAATTTAGAAATTCGTCAATTTGATTCAATACAAGATGAAATTACCGCTCTTGAGCAAATTATTAGTGGTGAACAACCATTACGCCGAGCATTACAAGTTCTACGTGATAACACGGTTATTCCAACTATTGATGAAAATTTACCACTTGATGAACAAAAAACACTGATGGCTGAGCCATCTTACCGTTTATTAACCCGCTTAGATCGCGAATTTACTCCTCAAACTGAGATATTAGTCAGTAACCAAGGGGAAAATTTACAGAATCTGAATCAAAAACTAAATGACTTACATCGTTACCTATTGGGGATCCAAAACTCTCCAGTGCCGGGGAAAGCGGCGCTTAAAGCAGTTTCGATGCGCTTAAACGATAATAATCGCGACGCTATTTTTGAGCTATCACAAATGGCGAAAACATTACCAGAGCCGCTTAACCGCTGGGTCGATGAGTTATCAGTGCAAGCATGGAATGTGGTCCAAAAAGAAGCTATTCGTTATATGGAAGTAGAATGGAATGAAAATGTTGTCAAACAATACAATACTTATATTGCCGGTCGCTATCCATTTAACCCAGCAGCTAAACAAGATGTTCCTTTAAGTGAATTTGAACGTTTCTTCAAACCAAATGGAACATTAGATAGCTTCTATCAACAAAATCTGCGTTTATTCGTTGAGAATAACTTAGTTAACGATAGTGATAGCCAATCATTGATCCGCGCTGATGTATTAGCACAAATTGAAATAGCCAATCGTATTAGAGAAACCTTCTTTAATGCCCAAGGTAATTTAGAAGCACAATATGCTATTGAGCCACTGTCATTAAGTGGTAATAAGCGTCGTAGCATCTTAAATCTTGATGGACAATTGATTGATTACGCTCATAGTCGCAGCCATGTGACACACTTGGTATGGCCAAACTCAATGCGTTCCAATATTGAAAGTAAACTGACTTTAGTGCCTCTTTCCGGTGATAAATCGCCACGTTCAATCAGTTTCTCTGGGCCATGGGCACAAATGCGATTAGTTGATAATGCAAAACTCATCAATATCAAATCTAACTCATTCGATATTCGCTTCACAATCGACGGTGGTGATATGACTTATCGAGTTATAGTTGATGAATCTAATAATCCTTTCTTCGGTGGATTATTCACAAAATTCCGTTTACCTGAAACGCTTTATTAATGTGATTTCCCCCACTTTATAGTGGGGGAATAAAAGGATGTTGAGTGCGA