Homologs in group_3800

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00080 F4V73_RS00080 25.5 Morganella psychrotolerans tssE type VI secretion system baseplate subunit TssE

Distribution of the homologs in the orthogroup group_3800

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3800

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I745 2.63e-13 67 29 3 155 1 tssE1 Type VI secretion system component TssE1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09310
Feature type CDS
Gene -
Product GPW/gp25 family protein
Location 1955551 - 1956045 (strand: -1)
Length 495 (nucleotides) / 164 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3800
Orthogroup size 2
N. genomes 1

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Genomic region

Domains

PF04965 Baseplate wedge protein gp25

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3518 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11897 type VI secretion system protein ImpF - -

Protein Sequence

MLDNKKQYLPALLDRLIDEHPKERREPVDKFYFDSRKMRSVILRDLLNILGTENTEGQLQRYSKSPVVDSVINYGIAPLTGAYARQLTWEQVEEKLRNAILRFESRVIPDSLIISPLADKDQYAQYGVIIFEIRTLVYWDPYPLDLRINGTYDMETQQVSLSYR

Flanking regions ( +/- flanking 50bp)

ATCTGAGCTAAATAAAGTTTCTATGGTAATGGTAAATACTGAAACCGAAAATGTTGGATAATAAAAAACAATATCTGCCTGCATTGCTTGATCGGTTGATCGATGAACATCCGAAAGAGCGGCGTGAGCCTGTCGATAAATTTTATTTCGATTCGCGTAAAATGCGTTCGGTGATATTGCGTGATCTTCTTAATATTCTCGGCACTGAAAATACAGAAGGGCAATTACAGCGTTACAGTAAATCGCCGGTTGTAGATTCAGTGATTAATTATGGCATCGCTCCGTTAACCGGGGCGTATGCCCGCCAATTGACCTGGGAACAGGTCGAAGAAAAACTACGTAATGCGATATTACGTTTTGAAAGCAGAGTTATTCCGGACTCACTGATTATTTCTCCCCTCGCGGATAAAGACCAGTATGCTCAATATGGAGTGATTATTTTTGAAATAAGAACCCTGGTTTATTGGGATCCTTATCCGTTAGATTTACGTATTAACGGAACGTATGATATGGAAACGCAGCAGGTTAGTTTAAGTTACCGGTAAGTCTGTCTCATACGACTGAGAGATTAATACCCTCATCCGATTTCGGTAAA