Orthogroup:group_3800


Homologs in group_3800

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2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS00080 F4V73_RS00080 Morganella psychrotolerans tssE type VI secretion system baseplate subunit TssE
F4V73_RS09310 F4V73_RS09310 Morganella psychrotolerans - GPW/gp25 family protein

Distribution of group_3800 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of the RefSeq best hits of group_3800

Orthogroup content: 2 members

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This page summarizes the annotation of all members of the orthologous group group_3800.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssE 1
2 - 1

Product

# Product Occurence
1 type VI secretion system baseplate subunit TssE 1
2 GPW/gp25 family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3518 2 U Intracellular trafficking, secretion, and vesicular transport (U) Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11897 2 type VI secretion system protein ImpF - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04965 2 Baseplate wedge protein gp25

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG041075 1 type VI secretion system baseplate subunit TssE VF1036 Effector delivery system

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Type VI secretion system component TssE1 1

Protein length

Min length 147
Max length 164
Mean length (sd) 155.5 (12.0)
Median length 155.5

Protein length distribution