Homologs in group_4235

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4235

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4235

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I745 8.89e-06 46 30 2 139 1 tssE1 Type VI secretion system component TssE1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00080
Feature type CDS
Gene tssE
Product type VI secretion system baseplate subunit TssE
Location 21449 - 21892 (strand: -1)
Length 444 (nucleotides) / 147 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4235
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF04965 Baseplate wedge protein gp25

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3518 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG041075 type VI secretion system baseplate subunit TssE VF1036 Effector delivery system

Protein Sequence

MKSSTPMLFDKLSLNRRRIHLPQWREVLLRDIELLLNDAAHSASLVLDKNTHCITSVINYGLPTLSSKVPVNTDPIILAKRIQQIIATFEPRLDPRSIRVTPFVNKNETWTLALLFDIYAKTNLPDEEHTVNLRIALDYSYGSVRVI

Flanking regions ( +/- flanking 50bp)

GGATTAAATAATGTATTGTGGTGTGGCTTTCCATTCCCGGAAACAATGAAATGAAATCATCAACGCCAATGCTTTTTGATAAATTAAGCCTGAACAGGCGAAGAATACATTTACCTCAGTGGCGGGAAGTTTTATTACGTGATATTGAATTATTATTAAATGATGCAGCACACAGCGCTTCATTAGTATTAGATAAAAATACACATTGTATTACCTCGGTAATCAATTACGGATTACCGACATTAAGTTCAAAAGTACCGGTAAATACTGACCCGATAATACTGGCAAAACGGATACAGCAGATTATTGCCACATTTGAACCCAGGCTCGATCCGCGTTCAATCCGGGTTACCCCGTTCGTTAATAAGAATGAGACATGGACCCTGGCGCTGCTCTTCGATATTTATGCCAAAACCAATTTACCGGATGAAGAGCACACGGTGAATTTACGTATCGCGCTTGATTACTCATACGGAAGTGTCCGGGTTATCTGACCCGTAAACAATAAACAAAGGGACAGGATGTCATTATGTTAAGCGAACGT