Homologs in group_94

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11 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10890 FBDBKF_10890 74.7 Morganella morganii S1 arsR DNA-binding transcriptional regulator, ArsR family
FBDBKF_20405 FBDBKF_20405 56.5 Morganella morganii S1 arsR DNA-binding transcriptional regulator, ArsR family
EHELCC_05335 EHELCC_05335 74.7 Morganella morganii S2 arsR DNA-binding transcriptional regulator, ArsR family
EHELCC_19730 EHELCC_19730 56.5 Morganella morganii S2 arsR DNA-binding transcriptional regulator, ArsR family
NLDBIP_05655 NLDBIP_05655 74.7 Morganella morganii S4 arsR DNA-binding transcriptional regulator, ArsR family
NLDBIP_19710 NLDBIP_19710 56.5 Morganella morganii S4 arsR DNA-binding transcriptional regulator, ArsR family
LHKJJB_02535 LHKJJB_02535 74.7 Morganella morganii S3 arsR DNA-binding transcriptional regulator, ArsR family
LHKJJB_19675 LHKJJB_19675 56.5 Morganella morganii S3 arsR DNA-binding transcriptional regulator, ArsR family
HKOGLL_15915 HKOGLL_15915 74.7 Morganella morganii S5 arsR DNA-binding transcriptional regulator, ArsR family
HKOGLL_19590 HKOGLL_19590 56.5 Morganella morganii S5 arsR DNA-binding transcriptional regulator, ArsR family
PMI_RS06185 PMI_RS06185 50.9 Proteus mirabilis HI4320 - ArsR family transcriptional regulator

Distribution of the homologs in the orthogroup group_94

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_94

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P96683 4.86e-46 155 37 2 220 4 ydfF Uncharacterized HTH-type transcriptional regulator YdfF Bacillus subtilis (strain 168)
P9WMI9 2.81e-06 48 36 3 98 1 cmtR HTH-type transcriptional regulator CmtR Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMI8 2.81e-06 48 36 3 98 3 cmtR HTH-type transcriptional regulator CmtR Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P67732 2.81e-06 48 36 3 98 3 cmtR HTH-type transcriptional regulator CmtR Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O08446 3.59e-05 47 33 1 87 1 Rv0324 HTH-type transcriptional regulator Rv0324 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q55940 0.000896 41 34 1 76 1 ziaR Transcriptional repressor SmtB homolog Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08480
Feature type CDS
Gene -
Product winged helix-turn-helix domain-containing protein
Location 1750902 - 1751594 (strand: 1)
Length 693 (nucleotides) / 230 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_94
Orthogroup size 12
N. genomes 7

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Genomic region

Domains

PF01022 Bacterial regulatory protein, arsR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0640 Transcription (K) K DNA-binding transcriptional regulator, ArsR family

Protein Sequence

MMITEQPPELESALATVAAALADPSRIKILCALMDGRSWTATELSIAAEISASTASAHLTKLVTGKLITCLPQGRHRYYHLAGQDVAELLEKMMALTEMPVTAVTRKSSTPDNLRLARTCYDHLAGETAVAIYAAMQEKNWLTPEGYGLTPEGETALTQLGLSLTPATKRVFCCGCLDWSERRFHLGGYLGAAFFTHCEQKGWLTRTPGYREVTITEKGKTHFRRIFNLP

Flanking regions ( +/- flanking 50bp)

GAAATCGGTCGCGAATACGCCTTTACGCGTGAAGATAAATAACCGGAAAAATGATGATAACGGAACAGCCCCCTGAATTAGAAAGTGCTCTCGCAACAGTCGCGGCGGCACTGGCTGATCCGTCACGCATAAAAATACTCTGTGCGCTGATGGACGGCAGATCCTGGACTGCCACTGAGCTGAGCATTGCCGCAGAAATCAGTGCGTCCACTGCCAGTGCCCACCTGACAAAGCTGGTTACGGGTAAGCTAATCACCTGCCTGCCGCAGGGACGACACCGCTATTATCATCTTGCGGGTCAGGATGTGGCTGAATTACTTGAGAAAATGATGGCACTGACCGAGATGCCGGTCACGGCTGTTACACGCAAATCATCCACTCCGGACAATCTGCGACTGGCGCGGACATGCTATGACCATCTGGCGGGTGAAACCGCTGTTGCTATCTATGCGGCTATGCAGGAAAAAAACTGGCTGACGCCGGAGGGTTACGGGCTGACCCCCGAAGGTGAAACGGCACTGACACAACTGGGATTATCACTTACCCCCGCCACAAAACGCGTTTTTTGCTGCGGCTGTCTGGACTGGAGTGAACGCCGCTTTCATCTGGGCGGTTACCTCGGTGCAGCATTTTTTACACACTGTGAACAAAAAGGCTGGCTGACCCGGACACCGGGCTACCGGGAAGTGACTATTACAGAAAAAGGTAAAACACACTTCCGGCGCATATTTAACCTACCGTGAAATATTATGAATTCCTGACTAAGAGTAATGATAATTTACGGGCAAACGGC