COG4794


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4794, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type III secretory pathway, EscS/YscS component
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG4794 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_315 FBDBKF_09305 93500 93766 -1 sctS type III secretion system export apparatus subunit SctS Morganella morganii S1
1 group_315 EHELCC_10105 52338 52604 1 sctS type III secretion system export apparatus subunit SctS Morganella morganii S2
2 group_315 NLDBIP_10450 30609 30875 1 sctS type III secretion system export apparatus subunit SctS Morganella morganii S4
3 group_315 LHKJJB_10905 160653 160919 -1 sctS type III secretion system export apparatus subunit SctS Morganella morganii S3
4 group_315 HKOGLL_13965 93954 94220 -1 sctS type III secretion system export apparatus subunit SctS Morganella morganii S5
5 group_315 F4V73_RS08340 1727942 1728196 1 sctS type III secretion system export apparatus subunit SctS Morganella psychrotolerans
6 group_315 F4V73_RS10660 261703 261969 1 sctS type III secretion system export apparatus subunit SctS Morganella psychrotolerans
7 group_315 PMI_RS13240 2939621 2939869 -1 sctS type III secretion system export apparatus subunit SctS Proteus mirabilis HI4320