Homologs in group_2092

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15745 FBDBKF_15745 95.7 Morganella morganii S1 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
EHELCC_17660 EHELCC_17660 95.7 Morganella morganii S2 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
NLDBIP_19330 NLDBIP_19330 95.7 Morganella morganii S4 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
LHKJJB_18100 LHKJJB_18100 95.7 Morganella morganii S3 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
HKOGLL_18980 HKOGLL_18980 95.7 Morganella morganii S5 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
PMI_RS05955 PMI_RS05955 37.1 Proteus mirabilis HI4320 - threo-3-hydroxy-L-aspartate ammonia-lyase

Distribution of the homologs in the orthogroup group_2092

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2092

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AGF9 8.96e-173 485 78 0 323 3 tdcB L-threonine dehydratase catabolic TdcB Shigella flexneri
P0AGF6 8.96e-173 485 78 0 323 1 tdcB L-threonine dehydratase catabolic TdcB Escherichia coli (strain K12)
P0AGF7 8.96e-173 485 78 0 323 3 tdcB L-threonine dehydratase catabolic TdcB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGF8 8.96e-173 485 78 0 323 3 tdcB L-threonine dehydratase catabolic TdcB Escherichia coli O157:H7
P11954 1.38e-169 477 77 0 323 1 tdcB L-threonine dehydratase catabolic TdcB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8NWQ4 1.54e-114 338 56 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain MW2)
Q6G9C4 1.54e-114 338 56 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain MSSA476)
Q6GGX0 1.54e-114 338 56 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain MRSA252)
Q5HFY5 1.54e-114 338 56 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain COL)
Q2FYJ3 1.54e-114 338 56 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FH01 1.54e-114 338 56 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain USA300)
Q2YY67 4.82e-113 334 55 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q7A5L8 3.18e-112 332 55 2 318 1 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain N315)
Q99U50 3.18e-112 332 55 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q9WYJ1 4.09e-84 262 50 3 318 1 TM_0356 L-threonine ammonia-lyase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q74FW6 1.63e-70 227 44 2 318 1 tdcB L-threonine ammonia-lyase Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
Q54HH2 2.37e-64 209 37 2 318 1 srr Serine racemase Dictyostelium discoideum
P36007 2.3e-62 204 39 2 320 1 SRY1 L-threo-3-hydroxyaspartate ammonia-lyase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
A4F2N8 6.55e-60 197 36 1 312 1 thadh L-threo-3-hydroxyaspartate ammonia-lyase Pseudomonas sp.
Q9KC63 1.02e-59 200 38 3 319 3 ilvA L-threonine dehydratase biosynthetic IlvA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
O59791 4.7e-59 195 37 2 318 1 sry1 Serine racemase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P46493 3.06e-57 196 38 1 309 3 ilvA L-threonine dehydratase biosynthetic IlvA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37946 1.21e-56 192 36 3 319 3 ilvA L-threonine dehydratase biosynthetic IlvA Bacillus subtilis (strain 168)
Q8CNK9 1.2e-55 189 36 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HMF5 1.2e-55 189 36 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q2PGG3 9.92e-54 182 36 2 310 1 SR Serine racemase Arabidopsis thaliana
Q7XSN8 1.26e-53 182 34 2 315 1 SERR Serine racemase Oryza sativa subsp. japonica
A2XWA9 1.26e-53 182 34 2 315 3 OsI_16936 Serine racemase Oryza sativa subsp. indica
Q9CKJ2 2.51e-53 185 39 5 288 3 ilvA L-threonine dehydratase biosynthetic IlvA Pasteurella multocida (strain Pm70)
Q9AXU4 3.81e-53 187 36 4 291 1 TD Threonine dehydratase Nicotiana attenuata
P25306 7.89e-52 183 37 2 292 1 TD2 Threonine dehydratase 2 biosynthetic, chloroplastic Solanum lycopersicum
P04968 1.56e-51 181 37 3 309 1 ilvA L-threonine dehydratase biosynthetic IlvA Escherichia coli (strain K12)
P20506 2.23e-51 180 37 4 309 3 ilvA L-Threonine dehydratase biosynthetic IlvA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q02145 2.41e-51 178 36 3 322 3 ilvA L-threonine dehydratase biosynthetic IlvA Lactococcus lactis subsp. lactis (strain IL1403)
A0JNI4 4.15e-51 175 32 4 326 2 SRR Serine racemase Bos taurus
Q10725 6e-51 174 36 4 291 1 psdht Phenylserine dehydratase Ralstonia pickettii
Q9GZT4 2.38e-49 171 33 4 315 1 SRR Serine racemase Homo sapiens
A1B8Z2 4.1e-49 169 33 5 315 1 bhcB beta-hydroxyaspartate dehydratase Paracoccus denitrificans (strain Pd 1222)
P00927 2.98e-47 170 36 4 297 1 ILV1 Threonine dehydratase, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
V5Y0V0 4.81e-47 166 36 4 297 3 AKTS1-1 Threonine dehydratase-like protein AKTS1-1 Alternaria alternata
P55664 5.81e-47 164 34 2 318 3 NGR_a01490 Putative threonine dehydratase Sinorhizobium fredii (strain NBRC 101917 / NGR234)
O42615 2.02e-46 167 36 3 295 3 ILV1 Threonine dehydratase, mitochondrial Blastobotrys adeninivorans
Q39469 2.58e-46 168 32 5 324 2 None Threonine dehydratase biosynthetic, chloroplastic Cicer arietinum
Q8NVI8 3.57e-46 164 35 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain MW2)
Q3V7T4 3.57e-46 164 35 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain MSSA476)
Q5HEE0 3.81e-46 164 35 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain COL)
Q2FWJ9 3.81e-46 164 35 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FF63 3.81e-46 164 35 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain USA300)
Q49Z16 5.27e-46 164 35 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q7A4H2 1.21e-45 163 35 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain N315)
Q99SJ1 1.21e-45 163 35 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain Mu50 / ATCC 700699)
P53607 1.75e-45 164 35 2 299 3 ilvA L-threonine dehydratase biosynthetic IlvA Burkholderia multivorans (strain ATCC 17616 / 249)
O94634 5.24e-45 165 36 5 317 3 SPBC1677.03c Threonine dehydratase, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q3V7T5 1.46e-44 160 34 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain MRSA252)
A0FKE6 4.2e-44 162 35 3 297 1 TD1 Threonine dehydratase 1 biosynthetic, chloroplastic Solanum lycopersicum
Q4L7U4 4.29e-44 159 35 4 320 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus haemolyticus (strain JCSC1435)
Q2YUE8 4.82e-44 159 34 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q9QZX7 4.39e-41 149 34 7 326 1 Srr Serine racemase Mus musculus
Q04513 9.49e-41 150 35 6 321 3 ilvA L-threonine dehydratase biosynthetic IlvA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q76EQ0 2.8e-40 147 33 4 320 1 Srr Serine racemase Rattus norvegicus
P9WG95 6.4e-40 148 36 4 318 1 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WG94 6.4e-40 148 36 4 318 3 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66898 6.4e-40 148 36 4 318 3 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9X7F1 1.62e-39 147 37 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium leprae (strain TN)
Q9ZSS6 8.92e-39 147 34 3 287 1 OMR1 Threonine dehydratase biosynthetic, chloroplastic Arabidopsis thaliana
P31212 5.62e-16 81 32 2 176 2 TD Threonine dehydratase biosynthetic, chloroplastic (Fragment) Solanum tuberosum
P25379 5.81e-15 78 23 7 274 1 CHA1 Catabolic L-serine/threonine dehydratase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q86B06 2.26e-13 73 24 6 290 3 sds L-serine dehydratase Dictyostelium discoideum
B5VKE8 3.7e-13 72 22 5 281 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain AWRI1631)
C8ZAU6 5.86e-13 72 22 4 281 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse)
B3LU13 5.86e-13 72 22 4 281 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain RM11-1a)
P09123 7.8e-13 72 27 9 275 3 thrC Threonine synthase Bacillus sp. (strain ULM1)
A6ZVB1 8.22e-13 71 22 4 281 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain YJM789)
P0CF23 1.36e-12 70 21 4 281 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae
Q8VBT2 2.85e-11 67 24 9 320 1 Sds L-serine dehydratase/L-threonine deaminase Mus musculus
Q0VCW4 5.27e-11 66 25 7 309 2 SDS L-serine dehydratase/L-threonine deaminase Bos taurus
Q8R238 1.97e-10 64 24 3 306 1 Sdsl Serine dehydratase-like Mus musculus
A0A6N3IN21 1.45e-09 62 24 3 296 1 Sdsl Serine dehydratase-like Rattus norvegicus
P20132 1.91e-09 61 24 5 279 1 SDS L-serine dehydratase/L-threonine deaminase Homo sapiens
Q9K7E3 7.29e-09 60 28 8 274 3 thrC Threonine synthase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q59447 4.69e-08 57 30 6 201 3 cysK Cysteine synthase Flavobacterium sp. (strain K3-15 / DSM ID92-509)
Q58860 1.43e-07 56 26 12 280 3 thrC Threonine synthase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P04990 1.96e-07 55 26 14 326 3 thrC Threonine synthase Bacillus subtilis (strain 168)
A0R220 1.08e-06 53 25 8 290 1 thrC Threonine synthase Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P09367 3.43e-06 52 22 8 318 1 Sds L-serine dehydratase/L-threonine deaminase Rattus norvegicus
P45837 4.01e-06 51 26 8 290 3 thrC Threonine synthase Mycobacterium leprae (strain TN)
Q96GA7 6.77e-06 50 23 3 309 1 SDSL Serine dehydratase-like Homo sapiens
P9WG59 7e-06 50 25 8 290 1 thrC Threonine synthase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WG58 7e-06 50 25 8 290 3 thrC Threonine synthase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66903 7e-06 50 25 8 290 3 thrC Threonine synthase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P66899 3.32e-05 48 23 8 213 1 ygeX Diaminopropionate ammonia-lyase Escherichia coli (strain K12)
P66900 3.32e-05 48 23 8 213 3 ygeX Diaminopropionate ammonia-lyase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P66901 3.32e-05 48 23 8 213 3 ygeX Diaminopropionate ammonia-lyase Escherichia coli O157:H7
B5ZNC1 4.42e-05 48 24 6 225 3 dsdA Probable D-serine dehydratase Rhizobium leguminosarum bv. trifolii (strain WSM2304)
P63872 6.07e-05 47 22 5 219 3 cysK Cysteine synthase Staphylococcus aureus (strain MW2)
Q6GBX5 6.07e-05 47 22 5 219 3 cysK Cysteine synthase Staphylococcus aureus (strain MSSA476)
Q6GJF8 6.07e-05 47 22 5 219 3 cysK Cysteine synthase Staphylococcus aureus (strain MRSA252)
P63871 6.07e-05 47 22 5 219 1 cysK Cysteine synthase Staphylococcus aureus (strain N315)
P63870 6.07e-05 47 22 5 219 3 cysK Cysteine synthase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HIG2 6.07e-05 47 22 5 219 3 cysK Cysteine synthase Staphylococcus aureus (strain COL)
P74193 0.000158 46 23 8 277 3 thrC Threonine synthase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8CMT6 0.000182 46 24 4 176 3 cysK Cysteine synthase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HRP1 0.000182 46 24 4 176 3 cysK Cysteine synthase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P0CF21 0.000285 43 27 2 112 5 YIL168W Putative truncated L-serine dehydratase YIL168W Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07945
Feature type CDS
Gene tdcB
Product bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
Location 1655608 - 1656594 (strand: -1)
Length 987 (nucleotides) / 328 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2092
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00291 Pyridoxal-phosphate dependent enzyme

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1171 Amino acid transport and metabolism (E) E Threonine deaminase

Kegg Ortholog Annotation(s)

Protein Sequence

MITYDLPVTIKDIIDAQKTIRGHVYKTGMPKSNYLSEKCNGTIHLKFENMQRTGSFKLRGAFNKLSSLTPEERAQGIVACSAGNHAQGVSLSCALLGINGKVVMPTGAPKSKIAATSDYSAEVILHGNNFNDTIGKAREIIEAEGRIFIPPYDDAKVIAGAGTIGLEILEDLYDVDNVIVPIGGGGLIAGIAIALKSINPTINVIGVQSENVHGMEASYRAGSITTHRVNGTVADGCDVSTPGSITYEIVKELVTDIILVTEEEIRESMVALIQRNKVVTEGAGALASAAILSGKLKKYIEHKKTVSLISGGNIDLTRISEIIGTHEK

Flanking regions ( +/- flanking 50bp)

AGTTAGTCTCAATTCTAATATATATATAAAAAGATAGGACGAGGTTTGTCATGATTACATATGATCTTCCAGTAACCATTAAAGATATCATCGATGCTCAGAAAACCATCAGAGGGCATGTTTATAAAACTGGGATGCCTAAGTCAAACTATTTAAGTGAGAAGTGCAACGGCACAATCCACTTAAAATTTGAGAACATGCAGCGTACAGGGTCGTTCAAACTCCGTGGTGCATTTAACAAATTAAGTTCGCTGACACCAGAAGAAAGAGCACAGGGCATTGTTGCCTGTTCAGCAGGTAACCACGCACAGGGCGTTTCATTATCCTGTGCCCTGTTAGGAATCAACGGCAAAGTTGTTATGCCTACCGGTGCACCTAAATCTAAAATTGCCGCGACATCAGACTATTCAGCAGAAGTCATTCTGCACGGTAATAATTTCAACGATACTATCGGTAAAGCAAGAGAAATCATCGAAGCTGAAGGCCGTATCTTTATCCCGCCTTATGATGACGCAAAAGTCATTGCAGGGGCAGGGACTATTGGTCTGGAAATTCTGGAAGACCTCTATGACGTTGATAACGTCATCGTTCCGATTGGCGGCGGTGGTCTGATTGCAGGTATCGCTATTGCACTGAAATCTATCAATCCAACTATTAATGTGATCGGTGTCCAATCTGAAAACGTTCATGGTATGGAAGCATCATACCGTGCTGGTAGTATCACCACTCATCGCGTCAACGGTACAGTTGCCGATGGTTGTGATGTGTCTACCCCGGGCAGTATCACGTATGAAATCGTGAAAGAGCTGGTAACAGACATCATTCTGGTAACAGAAGAAGAAATCCGTGAAAGTATGGTTGCGTTAATCCAGCGTAATAAAGTCGTGACAGAAGGTGCCGGTGCATTGGCGTCTGCTGCGATTCTGAGCGGAAAACTCAAAAAATATATTGAGCATAAGAAGACAGTCAGCCTCATTTCCGGCGGGAACATTGACCTGACTCGTATCTCTGAAATTATTGGTACCCACGAAAAATAATATTTGCATTGTCTTTTAAAAGGAAAAGCAACATGAGTACTGACAAAACC