Homologs in group_388

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14890 FBDBKF_14890 89.9 Morganella morganii S1 sSL2 Superfamily II DNA or RNA helicase
FBDBKF_16605 FBDBKF_16605 27.8 Morganella morganii S1 - Type I restriction enzyme endonuclease subunit
EHELCC_15695 EHELCC_15695 89.9 Morganella morganii S2 sSL2 Superfamily II DNA or RNA helicase
NLDBIP_16225 NLDBIP_16225 89.9 Morganella morganii S4 sSL2 Superfamily II DNA or RNA helicase
LHKJJB_15615 LHKJJB_15615 89.9 Morganella morganii S3 sSL2 Superfamily II DNA or RNA helicase
HKOGLL_14735 HKOGLL_14735 89.9 Morganella morganii S5 sSL2 Superfamily II DNA or RNA helicase
PMI_RS04060 PMI_RS04060 74.9 Proteus mirabilis HI4320 - DEAD/DEAH box helicase

Distribution of the homologs in the orthogroup group_388

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_388

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33919 0.0 880 70 1 585 1 radD Putative DNA repair helicase RadD Escherichia coli (strain K12)
Q1MTR1 1.51e-32 135 28 10 373 3 irc3 Putative mitochondrial ATP-dependent helicase irc3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P24125 8.42e-25 110 29 19 379 4 None 51.5 kDa protein Lactococcus phage (isolate 7-9)
Q06683 5.7e-24 110 25 12 387 1 IRC3 Putative ATP-dependent helicase IRC3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q971U1 9.18e-15 80 25 11 375 1 xpb1 DNA 3'-5' helicase/translocase StoXPB1 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
P08956 2.69e-12 73 26 17 406 1 hsdR Type I restriction enzyme EcoKI endonuclease subunit Escherichia coli (strain K12)
Q07736 8.33e-12 72 24 18 400 1 hsdR Type I restriction enzyme EcoAI endonuclease subunit Escherichia coli
Q47281 4.29e-10 66 23 16 401 3 hsdR Type I restriction enzyme EcoEI endonuclease subunit Escherichia coli
Q914K8 6.45e-09 62 25 10 262 4 SIFV0022 Putative helicase 22 Sulfolobus islandicus filamentous virus (isolate Iceland/Hveragerdi)
O29889 8.88e-08 58 23 18 390 1 xpb DNA 3'-5' translocase XPB Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q970I2 1.82e-07 57 30 4 152 1 xpb2 DNA 3'-5' translocase XPB2 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
A7IB61 4.32e-07 56 28 7 148 3 hel308 ATP-dependent DNA helicase Hel308 Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)
Q99J87 1.5e-06 55 28 8 184 1 Dhx58 ATP-dependent RNA helicase DHX58 Mus musculus
Q9BYX4 1.42e-05 52 29 10 193 1 IFIH1 Interferon-induced helicase C domain-containing protein 1 Homo sapiens
A7EFH4 3.82e-05 50 27 3 143 3 mph1 ATP-dependent DNA helicase mph1 Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Q4A127 0.000168 48 24 4 166 3 hsdR Type I restriction enzyme SsaAORF53P endonuclease subunit Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q5UYM9 0.000202 48 28 8 163 3 hel308 ATP-dependent DNA helicase Hel308 Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
A6RIS1 0.000208 48 27 3 143 3 mph1 ATP-dependent DNA helicase MPH1 Botryotinia fuckeliana (strain B05.10)
A8WK63 0.000297 47 27 6 173 3 CBG24191 Putative ATP-dependent DNA helicase Q1 Caenorhabditis briggsae
Q9TXJ8 0.000388 47 26 5 173 3 K02F3.12 Putative ATP-dependent DNA helicase Q1 Caenorhabditis elegans
Q8PRZ9 0.000421 47 28 4 150 3 uvrB UvrABC system protein B Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q0CWI2 0.000613 46 28 8 146 3 mph1 ATP-dependent DNA helicase mph1 Aspergillus terreus (strain NIH 2624 / FGSC A1156)
A1D4V5 0.000646 46 27 8 146 3 mph1 ATP-dependent DNA helicase mph1 Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)
P20703 0.000713 46 23 15 365 1 uvsW ATP-dependent DNA helicase uvsW Enterobacteria phage T4
Q4WKB5 0.000715 46 27 8 146 3 mph1 ATP-dependent DNA helicase mph1 Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
B0XMV6 0.000715 46 27 8 146 3 mph1 ATP-dependent DNA helicase mph1 Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10)
Q8R5F7 0.001 46 28 9 191 1 Ifih1 Interferon-induced helicase C domain-containing protein 1 Mus musculus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07690
Feature type CDS
Gene -
Product DEAD/DEAH box helicase
Location 1607984 - 1609744 (strand: 1)
Length 1761 (nucleotides) / 586 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_388
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00271 Helicase conserved C-terminal domain
PF04851 Type III restriction enzyme, res subunit

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1061 Transcription (K)
Replication, recombination and repair (L)		 KL Superfamily II DNA or RNA helicase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19789 DNA repair protein RadD - -

Protein Sequence

MAFTLRPYQQEAVDATLHYFRKHTTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVEQNHSKYHAYGLNAGIYSAGLAQKESSQKVIFGSVQSVARNTDDFGGAFSLLIIDECHRISLSEDSQYQQVIQHLRKTNPGLRILGLTATPYRLGSGWIYQYHYHGMIRGEDSCFFRDCIYELPLRYMINHHYLVPPQRLDMPVLHYDFSQVPVSSLGIFDTQALNRELKKQKRITPQIVRQIIEYAAPRQGCMVFAATVEHAAEIVTLLPAGEAALISADTPAQEREAVIRAFKARELHYLVNVSVLTTGFDAPHVDVIAILRPTESVSLYQQIAGRGLRLSPGKTECLILDYAGNPHDLFMPEVGTHKPNSKSQPVQVFCPLCGFANLFWGICTDDGHIIEHYGRRCQGIIDADDDCARHQCDFRFRFKLCPSCNGENDIAARRCCHCDDILSDPDDMLKAALRLKNSLVLRCGGMTLTPGTDNRGEWLSVNYYDEDGTSVSERFRLTTPAQRFVFEKQFLAQHLRAPGVPFNWQDAQSVISQQILLRYPDFIVARKKEPYWQIREKIFDYHGRFRKSDSLA

Flanking regions ( +/- flanking 50bp)

TATGATATGCTTATTACCCTGTTTTCTGTACCAACCCGCCGGAGTTATTCATGGCTTTCACCCTGCGCCCTTATCAGCAGGAGGCTGTCGACGCCACACTGCACTATTTCCGCAAGCACACCACACCGGCAGTCATTGTTTTACCGACCGGTGCCGGGAAAAGTCTGGTCATTGCAGAACTGGCAAGGCTTGCGCGCGGACGGGTGCTGGTGCTTGCCCATGTGAAAGAACTGGTTGAACAAAATCACAGCAAATATCATGCCTATGGATTAAATGCAGGGATTTATTCAGCCGGGCTGGCACAAAAAGAATCCTCACAAAAAGTCATATTCGGCAGTGTGCAATCCGTCGCGCGTAATACTGACGATTTCGGCGGCGCCTTTTCACTGCTGATTATAGATGAATGCCACCGCATCAGCCTGAGTGAAGACAGTCAGTACCAGCAGGTCATACAGCATCTGCGCAAAACCAATCCGGGTCTTCGGATCCTGGGGCTGACCGCCACCCCCTACCGGCTCGGCAGCGGCTGGATCTATCAATATCACTACCATGGCATGATCCGCGGAGAAGATTCGTGCTTCTTCCGCGATTGCATCTATGAATTGCCGCTTCGCTACATGATAAACCATCACTATCTGGTGCCGCCACAACGCCTGGATATGCCGGTTCTGCATTATGATTTCAGTCAGGTGCCGGTCAGTTCCCTTGGTATTTTTGACACACAGGCACTGAACCGTGAGCTGAAAAAACAAAAACGCATCACACCACAGATTGTCCGCCAGATTATTGAATACGCCGCACCCCGTCAGGGTTGTATGGTATTTGCTGCCACCGTGGAGCACGCAGCAGAGATAGTCACTCTGCTGCCGGCAGGAGAAGCTGCGCTTATCAGCGCCGATACCCCGGCACAGGAGCGTGAAGCGGTGATCCGTGCCTTTAAAGCCCGCGAACTGCACTATCTGGTGAATGTCTCCGTTCTGACAACCGGGTTTGATGCACCGCATGTGGATGTCATCGCTATTTTGCGCCCGACTGAATCTGTCAGTCTTTACCAGCAGATTGCCGGACGCGGGTTGCGCCTGTCCCCCGGAAAAACAGAGTGTCTTATCCTCGACTATGCCGGAAATCCGCATGATCTCTTTATGCCGGAAGTAGGGACTCACAAACCAAACAGCAAAAGTCAGCCGGTGCAGGTATTCTGCCCGCTCTGCGGATTTGCCAACCTCTTCTGGGGAATATGTACCGACGACGGGCATATTATTGAGCACTATGGCCGCCGCTGTCAGGGAATTATTGATGCCGATGATGATTGCGCCCGCCATCAGTGTGATTTCCGCTTCCGCTTCAAACTCTGCCCGTCCTGCAACGGCGAAAATGATATTGCCGCCCGACGTTGCTGCCACTGTGATGACATCCTCAGTGATCCTGATGATATGCTCAAAGCCGCACTGCGCCTGAAAAATTCGCTGGTATTACGCTGCGGTGGCATGACGCTCACCCCCGGCACGGATAATCGTGGTGAATGGTTATCCGTGAATTATTATGACGAGGATGGCACATCCGTCAGTGAACGTTTCCGTCTGACAACCCCGGCGCAGCGTTTTGTATTTGAAAAACAGTTTCTGGCGCAGCATTTACGTGCGCCGGGTGTGCCGTTTAACTGGCAGGATGCACAATCGGTGATCAGCCAGCAAATCCTGCTGCGCTACCCTGATTTTATTGTCGCGCGCAAAAAAGAACCGTATTGGCAAATTCGTGAAAAAATCTTTGATTATCATGGGCGTTTTCGTAAATCTGATAGTCTGGCATAATCTTATACTCCGCTTTTCCGCTTTTATACCGGGTTTCGTTTGCCGTTTGT