Homologs in group_1958

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14680 FBDBKF_14680 95.0 Morganella morganii S1 tatD metal-dependent hydrolase
EHELCC_15485 EHELCC_15485 95.0 Morganella morganii S2 tatD metal-dependent hydrolase
NLDBIP_16015 NLDBIP_16015 95.0 Morganella morganii S4 tatD metal-dependent hydrolase
LHKJJB_15825 LHKJJB_15825 95.0 Morganella morganii S3 tatD metal-dependent hydrolase
HKOGLL_14945 HKOGLL_14945 95.0 Morganella morganii S5 tatD metal-dependent hydrolase
PMI_RS04260 PMI_RS04260 79.5 Proteus mirabilis HI4320 - metal-dependent hydrolase

Distribution of the homologs in the orthogroup group_1958

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1958

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFQ7 6.16e-143 404 75 0 256 1 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli (strain K12)
P0AFQ8 6.16e-143 404 75 0 256 3 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ9 6.16e-143 404 75 0 256 3 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli O157:H7
P44718 2.72e-110 321 58 1 259 3 HI_0454 Uncharacterized metal-dependent hydrolase HI_0454 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AG7 5.3e-93 277 49 1 257 3 bbp_325 Uncharacterized metal-dependent hydrolase bbp_325 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9J1 7.43e-93 277 47 2 263 3 BUsg_343 Uncharacterized metal-dependent hydrolase BUsg_343 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57436 1.3e-92 276 48 1 264 3 BU355 Uncharacterized metal-dependent hydrolase BU355 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P37545 2.1e-68 214 40 3 259 3 yabD Uncharacterized metal-dependent hydrolase YabD Bacillus subtilis (strain 168)
P73335 2.22e-59 192 41 4 263 1 dtd3 D-aminoacyl-tRNA deacylase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9PRC8 6.12e-44 152 33 7 261 3 UU017 Uncharacterized metal-dependent hydrolase UU017 Ureaplasma parvum serovar 3 (strain ATCC 700970)
O08343 7.55e-37 134 37 3 199 1 tatD Uncharacterized metal-dependent hydrolase TatD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q3U1C6 1.55e-32 123 32 8 269 1 Tatdn3 Putative deoxyribonuclease TATDN3 Mus musculus
B7LTZ5 1.44e-31 120 30 3 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
P47255 8.44e-31 118 33 10 263 3 MG009 Uncharacterized metal-dependent hydrolase MG009 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q0SZ31 1.35e-30 117 30 3 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Shigella flexneri serotype 5b (strain 8401)
A4WFX9 2.44e-30 117 31 3 242 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Enterobacter sp. (strain 638)
A1A4M4 2.97e-30 117 32 10 267 2 TATDN3 Putative deoxyribonuclease TATDN3 Bos taurus
P78005 3.02e-30 116 31 8 262 3 MPN_009 Uncharacterized metal-dependent hydrolase MPN_009 Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q9L6M2 1.09e-29 115 29 3 251 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P27859 2.51e-29 114 29 3 252 1 tatD 3'-5' ssDNA/RNA exonuclease TatD Escherichia coli (strain K12)
Q58977 5.4e-29 113 28 9 259 3 MJ1582 Uncharacterized metal-dependent hydrolase MJ1582 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
E8XYF5 6.5e-29 113 29 5 244 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Rahnella sp. (strain Y9602)
B2VG45 1.34e-28 112 29 4 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
D2TUZ4 1.86e-28 112 30 3 244 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Citrobacter rodentium (strain ICC168)
Q17R31 2.03e-28 112 32 9 267 1 TATDN3 Putative deoxyribonuclease TATDN3 Homo sapiens
D4ICL5 1.4e-27 109 30 4 250 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3)
D8MKW4 1.76e-27 109 29 4 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia billingiae (strain Eb661)
A7MQN1 2.91e-27 108 30 4 240 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Cronobacter sakazakii (strain ATCC BAA-894)
A8ACY8 2.94e-27 108 29 3 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
B5XYH5 7.17e-27 107 28 3 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Klebsiella pneumoniae (strain 342)
Q503T5 1.52e-26 107 30 8 267 2 tatdn3 Putative deoxyribonuclease tatdn3 Danio rerio
P44500 5.71e-25 102 26 6 263 3 HI_0081 Uncharacterized metal-dependent hydrolase HI_0081 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
E1SKR8 7.9e-25 102 31 3 202 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea vagans (strain C9-1)
D4GGR2 1.21e-24 102 29 4 240 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea ananatis (strain LMG 20103)
E3G381 1.92e-24 101 29 4 243 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Enterobacter lignolyticus (strain SCF1)
D0Z9R0 5.83e-24 100 27 5 248 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Edwardsiella tarda (strain EIB202)
C9XTA5 7.94e-24 99 30 3 239 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)
Q05AV0 1.69e-23 99 28 10 265 2 tatdn3-a Putative deoxyribonuclease tatdn3-A Xenopus laevis
C6C4V4 1.68e-22 96 28 4 229 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Musicola paradisiaca (strain Ech703)
P39408 7.47e-22 94 26 4 258 1 yjjV Uncharacterized metal-dependent hydrolase YjjV Escherichia coli (strain K12)
B7XJI2 1.77e-21 93 30 8 202 3 EBI_25826 Putative deoxyribonuclease TATDN1 homolog Enterocytozoon bieneusi (strain H348)
Q6DAQ1 4.35e-21 92 26 4 233 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
D0KC77 4.62e-21 92 26 5 234 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium parmentieri (strain WPP163)
A8G8C4 5.8e-21 92 28 5 241 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Serratia proteamaculans (strain 568)
E6WHK1 1.65e-20 90 28 3 202 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea sp. (strain At-9b)
Q93075 3.08e-20 93 32 10 227 1 TATDN2 Putative deoxyribonuclease TATDN2 Homo sapiens
E0SLH6 1.8e-19 88 27 4 255 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Dickeya dadantii (strain 3937)
C6DI71 5.84e-19 86 27 3 202 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium carotovorum subsp. carotovorum (strain PC1)
B1JP69 2.98e-18 84 28 3 201 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q148G4 2.16e-17 83 24 6 270 2 TATDN1 Deoxyribonuclease TATDN1 Bos taurus
Q6GPM3 2.6e-17 82 27 10 265 2 tatdn3-b Putative deoxyribonuclease tatdn3-B Xenopus laevis
C4VAS3 4.88e-17 81 26 11 260 3 NCER_101798 Putative deoxyribonuclease TATDN1 homolog Vairimorpha ceranae (strain BRL01)
Q6P8M1 1.88e-16 80 24 7 270 1 Tatdn1 Deoxyribonuclease TATDN1 Mus musculus
Q9UUF1 4.85e-15 76 24 11 286 3 pi038 Deoxyribonuclease Tat-D Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q8SW70 7.96e-14 72 27 6 209 3 ECU03_0200 Putative deoxyribonuclease TATDN1 homolog Encephalitozoon cuniculi (strain GB-M1)
Q6P1N9 5.76e-12 67 23 7 270 1 TATDN1 Deoxyribonuclease TATDN1 Homo sapiens
Q640V9 1.98e-11 66 23 8 272 2 tatdn1 Deoxyribonuclease TATDN1 Xenopus laevis
Q6GML7 5.78e-11 64 25 8 273 1 tatdn1 Deoxyribonuclease TATDN1 Danio rerio
P38430 3.85e-07 53 27 7 202 1 YMR262W Uncharacterized deoxyribonuclease YMR262W Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P45305 4.17e-07 53 23 9 217 3 HI_1664 Uncharacterized metal-dependent hydrolase HI_1664 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q58171 3.58e-06 50 23 9 209 3 MJ0761 Uncharacterized metal-dependent hydrolase MJ0761 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58778 3.79e-06 50 29 8 160 3 MJ1383 Uncharacterized protein MJ1383 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07475
Feature type CDS
Gene -
Product metal-dependent hydrolase
Location 1563240 - 1564019 (strand: -1)
Length 780 (nucleotides) / 259 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1958
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01026 TatD related DNase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0084 Cell motility (N) N 3'->5' ssDNA/RNA exonuclease TatD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03424 TatD DNase family protein [EC:3.1.21.-] - -

Protein Sequence

MFLVDSHCHLDCLDYEKLHENVDDVLQKAAQRDVHYALAVATTLPGYTKMRELIGERDNVAFSCGIHPLNLDEPYDFTLLRELAADPRVLALGETGLDYYYQKENAALQRDVFREHIRVGRELNKPVIVHTRDAREDTLAIIREEQAGDCGGVLHCFTEDKETATALLDEGFYISFSGILTFRNAEQIREAARIVPLDRILVETDSPYLAPVPFRGKENQPAYVRDVAEYMAVLKGVSVEALAEITTDNFCRLFQVSVR

Flanking regions ( +/- flanking 50bp)

TCAGGAAACGCTGTTTTCTGCACCACCTTTATCAACCCAATGAGTTTATTATGTTTTTAGTCGATTCCCATTGCCACCTTGATTGTCTGGATTACGAAAAACTGCATGAAAATGTGGATGATGTACTGCAAAAAGCCGCACAGCGTGATGTGCATTATGCCCTCGCAGTGGCAACAACCCTGCCCGGCTACACAAAAATGCGTGAGCTGATTGGTGAGCGCGATAATGTCGCGTTCTCCTGTGGTATTCATCCGCTGAATCTGGATGAGCCGTATGATTTCACCCTGCTGCGTGAACTGGCGGCAGATCCGCGTGTGCTCGCACTGGGCGAAACCGGGCTTGATTATTACTATCAGAAAGAAAATGCCGCATTACAGCGCGATGTATTCCGTGAGCATATCCGCGTCGGACGTGAGCTGAACAAACCCGTGATCGTACATACCCGTGATGCGCGCGAAGACACGCTGGCGATTATCCGCGAAGAACAGGCCGGTGATTGTGGCGGCGTGTTACACTGTTTTACCGAAGATAAAGAAACCGCCACAGCACTGCTGGATGAGGGTTTTTACATCTCATTTTCCGGTATTCTGACCTTCCGTAATGCAGAACAGATCCGCGAAGCCGCGCGCATTGTTCCGCTGGATCGCATTCTGGTAGAGACCGATTCACCCTATCTGGCGCCTGTTCCGTTCCGCGGAAAAGAGAACCAGCCCGCCTATGTACGCGATGTGGCGGAATATATGGCTGTTTTAAAAGGTGTGAGCGTTGAAGCGCTTGCTGAAATCACCACTGACAATTTCTGTCGTTTGTTTCAGGTGTCTGTCCGCTAAACCCGGATACTGATACGGCAGAATTATTACAGGAGCAGGTCATGTCCGAA