Homologs in group_3686

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00095 F4V73_RS00095 35.6 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
F4V73_RS09365 F4V73_RS09365 38.5 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
F4V73_RS16870 F4V73_RS16870 38.8 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit

Distribution of the homologs in the orthogroup group_3686

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3686

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I749 7.99e-25 97 35 2 146 1 tssB1 Type VI secretion system sheath protein TssB1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07025
Feature type CDS
Gene tssB
Product type VI secretion system contractile sheath small subunit
Location 1459440 - 1459949 (strand: -1)
Length 510 (nucleotides) / 169 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3686
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3516 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component TssA of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11901 type VI secretion system protein ImpB Biofilm formation - Pseudomonas aeruginosa -

Protein Sequence

MAINAQHKRVNKNRVSITYDVETNGESENRELPFVVGVVGDFSGHKSADKKCAPEDREFTGIDKDNFNDVMAQISPELTFNVDNTLCDDGSEFPVELRFQSMADFHPENLVDQIAPLKSLVDTRNQLKTLLSKADRSRDLEQLLKEILQNTQALELLSSELAVTEGRNE

Flanking regions ( +/- flanking 50bp)

CGGGAAGCCTGCGGGCTTCCCGTTTTATCCACTGCGTAAAGGAGAGCGATATGGCAATTAACGCGCAACATAAGCGGGTCAATAAAAACCGCGTCAGTATTACCTATGACGTTGAAACAAATGGTGAATCAGAAAACCGGGAATTGCCGTTTGTGGTGGGGGTGGTCGGGGATTTCTCCGGTCATAAATCTGCCGATAAAAAATGCGCACCGGAAGACCGCGAATTTACCGGTATTGATAAAGACAATTTTAATGATGTGATGGCGCAGATTAGCCCGGAGCTGACATTCAATGTCGATAACACTTTGTGTGATGATGGCAGTGAATTTCCGGTAGAACTGCGTTTTCAGTCAATGGCGGATTTTCATCCGGAAAATCTGGTGGATCAGATAGCGCCGCTTAAATCCCTGGTTGATACCCGTAACCAACTGAAAACATTGCTCAGCAAGGCTGACCGCTCCCGTGATCTGGAGCAATTGCTCAAAGAGATATTACAAAATACGCAGGCACTTGAATTGCTCTCGTCAGAATTGGCGGTAACGGAGGGCCGCAATGAGTGAGTCACTACAGGCGCAGGCCGCCGGGCAGGAAACAGTTTCTGAGCTGAGTT