Homologs in group_174

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00870 FBDBKF_00870 82.0 Morganella morganii S1 higA Antitoxin HigA
EHELCC_00675 EHELCC_00675 82.0 Morganella morganii S2 higA Antitoxin HigA
NLDBIP_02785 NLDBIP_02785 82.0 Morganella morganii S4 higA Antitoxin HigA
LHKJJB_04300 LHKJJB_04300 82.0 Morganella morganii S3 higA Antitoxin HigA
HKOGLL_02745 HKOGLL_02745 82.0 Morganella morganii S5 higA Antitoxin HigA
F4V73_RS10155 F4V73_RS10155 22.4 Morganella psychrotolerans - helix-turn-helix domain-containing protein
F4V73_RS13455 F4V73_RS13455 44.4 Morganella psychrotolerans - XRE family transcriptional regulator
PMI_RS15475 PMI_RS15475 25.6 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_174

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_174

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P9WJA7 2e-11 59 47 0 59 1 higA1 Antitoxin HigA1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WJA6 2e-11 59 47 0 59 3 higA1 Antitoxin HigA1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O53467 0.000575 39 34 2 81 1 higA2 Putative antitoxin HigA2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06860
Feature type CDS
Gene -
Product XRE family transcriptional regulator
Location 1421101 - 1421403 (strand: -1)
Length 303 (nucleotides) / 100 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_174
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF13560 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3620 Transcription (K) K Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)

Protein Sequence

MGKSLEQLLADETPEVVADAKAMATEILLNIHLAQLRERVQKTQVEMAQALGIKQPTVAGMEKPGRDLKLSTLRRYVDAIGGKLNIDIELPDGSHHTFIV

Flanking regions ( +/- flanking 50bp)

GATCGGGAGTTCACTGACTGGCTGAATGCACTAAAGAACAGGAGGTAAAGATGGGGAAATCACTGGAGCAACTGCTTGCAGATGAAACACCTGAAGTGGTCGCTGATGCAAAAGCGATGGCAACAGAGATATTGCTTAATATCCACCTTGCGCAGTTGCGGGAGCGGGTACAAAAAACCCAGGTGGAAATGGCACAGGCGCTGGGAATCAAGCAACCAACGGTTGCCGGAATGGAAAAACCGGGGCGTGACCTGAAATTATCGACACTCAGACGCTATGTTGATGCGATAGGCGGTAAACTGAATATTGATATTGAACTGCCGGATGGTTCACATCATACATTTATAGTGTGAAAAATAAGGGATTTACTAATAGATCCGGACAGGAACGCAGGGTAAATTAA