Homologs in group_432

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00375 FBDBKF_00375 87.7 Morganella morganii S1 rcsD phosphotransferase RcsD
EHELCC_01170 EHELCC_01170 87.7 Morganella morganii S2 rcsD phosphotransferase RcsD
NLDBIP_02290 NLDBIP_02290 87.7 Morganella morganii S4 rcsD phosphotransferase RcsD
LHKJJB_03805 LHKJJB_03805 87.7 Morganella morganii S3 rcsD phosphotransferase RcsD
HKOGLL_03240 HKOGLL_03240 87.7 Morganella morganii S5 rcsD phosphotransferase RcsD
PMI_RS08485 PMI_RS08485 42.7 Proteus mirabilis HI4320 rcsD phosphotransferase RcsD

Distribution of the homologs in the orthogroup group_432

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_432

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39838 9.67e-114 372 29 7 873 1 rcsD Phosphotransferase RcsD Escherichia coli (strain K12)
Q9KLK7 2.49e-16 87 23 2 294 1 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P58662 6.69e-13 76 20 10 463 3 rcsC Sensor histidine kinase RcsC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q56128 1.31e-12 75 20 10 463 3 rcsC Sensor histidine kinase RcsC Salmonella typhi
P0DMC5 2.15e-12 75 21 12 464 1 rcsC Sensor histidine kinase RcsC Escherichia coli (strain K12)
P0DMC6 2.47e-12 74 21 11 459 1 rcsC Sensor histidine kinase RcsC Escherichia coli
P54302 4.43e-11 70 20 4 309 1 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ Vibrio harveyi
Q87GU5 1.64e-10 68 21 4 309 3 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q54YH4 8.87e-10 66 22 4 244 1 dhkB Hybrid signal transduction histidine kinase B Dictyostelium discoideum
Q8D5Z6 6.15e-09 63 21 6 319 3 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ Vibrio vulnificus (strain CMCP6)
Q7MD16 6.36e-09 63 21 6 319 3 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ Vibrio vulnificus (strain YJ016)
P30855 8.49e-06 53 22 5 266 1 evgS Sensor protein EvgS Escherichia coli (strain K12)
P58402 1.33e-05 53 23 14 356 3 evgS Sensor protein EvgS Escherichia coli O157:H7
P16575 1.63e-05 52 22 3 248 1 bvgS Virulence sensor protein BvgS Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P59342 2.42e-05 52 22 4 235 3 barA Signal transduction histidine-protein kinase BarA Shigella flexneri
P0AEC5 2.42e-05 52 22 4 235 1 barA Signal transduction histidine-protein kinase BarA Escherichia coli (strain K12)
P0AEC6 2.42e-05 52 22 4 235 1 barA Signal transduction histidine-protein kinase BarA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEC7 2.42e-05 52 22 4 235 3 barA Signal transduction histidine-protein kinase BarA Escherichia coli O157:H7
P26762 4.14e-05 51 22 3 248 3 bvgS Virulence sensor protein BvgS Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
P40330 5.77e-05 50 22 3 248 3 bvgS Virulence sensor protein BvgS Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
P35164 0.000125 49 21 4 228 1 resE Sensor histidine kinase ResE Bacillus subtilis (strain 168)
Q86CZ2 0.000166 49 22 16 370 1 dhkK Hybrid signal transduction histidine kinase K Dictyostelium discoideum
Q54YZ9 0.000294 48 23 7 291 3 dhkJ Hybrid signal transduction histidine kinase J Dictyostelium discoideum
Q869S5 0.000647 47 22 4 220 1 dokA Hybrid signal transduction protein dokA Dictyostelium discoideum
Q9F8D7 0.000805 47 21 5 252 3 gacS Sensor histidine kinase GacS Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06355
Feature type CDS
Gene rcsD
Product phosphotransferase RcsD
Location 1320008 - 1322722 (strand: 1)
Length 2715 (nucleotides) / 904 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_432
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01627 Hpt domain
PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
PF16359 RcsD-ABL domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2205 Signal transduction mechanisms (T) T K+-sensing histidine kinase KdpD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07676 two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] Two-component system
Biofilm formation - Escherichia coli		 -

Protein Sequence

MYRHSNSKPYTIPGFYASFVSLLVLSLFLYGYNYYDAWLGSKKGALLSFSNRIEHQVETYRYQSIELFRLANAADTEKRPELVPPHKILNDIYWIDSRVPIVDAILFGRTDDETYSIARRFSDYLTILWGGNNQFNSMYYLNGLDNSLLLVTSHSALRPELRYRESYLTLSADEKRTEMLADSTALDERETLSSFTKLRTESTYYYTYRAMFNNPGQLTSVVAFDLPINTMVPDNLDLANLALVPAESNIISNRTSPVQISINGLSLKLSYRLSDMPYQVIYQLSLLALAQEMLSANIWLLISILLFSILSVGGLIYIRKRFISPLNSLVRQAKNSEAMTNEIVAQLPLGLAIYDFATNKRLINNTIANQLLALSDLSKTRDMAREHQGRIQTTIDNVVYEVSMNPVRSMNDTYLILFQDKDQEALTARRLQLSDREYNKSIKARHSVLKNIKSELAIPVKQLGNDLHALKMYVTDNTGRQLMNKVATESGYLSEWIENIILLADLETDDWKPTNDEFLLSTTIEDIVKQFSRQINDKGIPLYFHNGINRQLNYIGDGPIISKIILLLLNYAVSNLKYGKLVVRLKNIFKDEHNNIKFEIIASGSGLPSSDLVNRYDPFMCQVAETENRPNSGLAFYLCDLLCKKLKGKLKIDSKPDIGTHYIVELPLPATESRGEPSGILEDTLFKLNIINPSIREIINAIISENGGILFDKNRALLQDEYDILITDFDKKARKPILFLRNDIVEHKMITPSLVECNYNFNDEILNAITLLIEQSLTSDEFDDRFLPGDSGINTSTLSVGEVVALYKNQLAQSTYNDLFATTVPPDINKMYTEAELSELQPLALTVHRVKGVFAVLDFDYLKTRCEDIEQYIADKNKIKIDEGIREIDAIVIELLQQGNHEYE

Flanking regions ( +/- flanking 50bp)

CCCGGTGGATTTTCAGTCAAGTACTTACTAATAAGGTTGTAACGGAAAATATGTACAGACATTCAAATTCCAAGCCTTATACGATACCCGGCTTTTATGCATCATTTGTTTCGCTGTTAGTTTTATCTCTCTTCTTATATGGATATAACTACTACGATGCCTGGCTGGGAAGCAAAAAAGGCGCATTACTCAGTTTCAGCAACCGGATAGAACATCAGGTTGAAACATACCGATATCAGTCAATTGAGCTGTTCAGGCTCGCCAATGCAGCGGATACGGAAAAACGTCCCGAACTCGTTCCTCCGCATAAGATCCTGAATGACATTTACTGGATTGACAGCCGTGTACCGATTGTCGATGCTATTTTGTTCGGACGGACCGATGACGAAACCTATTCGATTGCCAGACGGTTTTCTGATTATCTGACCATTTTGTGGGGCGGAAATAACCAATTCAATTCCATGTATTACCTTAATGGTCTGGATAACAGCCTGCTGTTAGTCACCTCTCACTCTGCCCTGCGTCCGGAATTACGCTACCGCGAAAGCTATCTGACACTCAGTGCTGATGAAAAACGTACAGAAATGCTGGCGGATTCAACGGCGCTGGATGAACGGGAAACATTGTCGTCATTTACTAAACTGCGGACTGAGTCGACCTATTACTACACATACCGGGCGATGTTTAATAACCCCGGTCAATTAACCAGTGTAGTCGCATTCGATTTACCAATTAATACCATGGTGCCTGATAACCTCGACCTCGCAAACCTGGCACTGGTCCCGGCGGAATCAAATATCATCAGCAACCGGACAAGTCCGGTGCAAATCAGTATTAACGGGCTGTCACTGAAACTCAGCTACCGCCTCAGTGATATGCCGTATCAGGTTATCTATCAGCTCTCCCTGCTCGCGCTGGCTCAAGAGATGCTTTCAGCCAATATATGGTTATTAATTTCAATTTTGCTTTTCAGTATTTTATCCGTTGGCGGTCTTATTTATATCCGCAAGCGATTTATTTCGCCGCTGAATTCATTAGTCCGCCAGGCAAAAAACAGCGAAGCGATGACGAATGAAATAGTCGCTCAACTTCCGCTCGGGCTTGCAATTTATGATTTCGCCACCAATAAGCGGCTGATAAATAATACGATTGCCAATCAGCTACTGGCATTGAGTGATTTAAGTAAAACCCGTGACATGGCCCGCGAACATCAGGGACGGATCCAAACCACCATTGATAATGTCGTCTATGAAGTCAGTATGAACCCTGTCCGCAGTATGAATGATACCTATCTGATCCTGTTCCAGGATAAAGATCAGGAAGCATTGACGGCGCGGCGTCTGCAATTATCTGACCGTGAATATAATAAGAGTATTAAAGCCCGCCACTCCGTACTGAAGAATATTAAATCTGAGTTAGCGATACCGGTTAAGCAGCTTGGTAATGATCTGCACGCGCTGAAAATGTATGTCACCGACAATACCGGCAGACAGTTAATGAATAAAGTCGCGACAGAGTCCGGCTACCTCAGTGAATGGATTGAAAATATTATTTTACTGGCCGACCTCGAAACTGATGACTGGAAGCCAACAAATGATGAGTTCCTGTTATCAACAACCATTGAAGATATTGTGAAACAGTTTTCACGACAAATTAATGACAAAGGGATCCCCCTTTATTTTCATAACGGGATAAACAGACAGCTAAACTATATTGGTGATGGGCCGATCATAAGTAAAATTATTTTATTATTGCTGAATTATGCTGTCAGTAATTTAAAATATGGAAAATTAGTTGTTCGCCTCAAGAATATATTCAAGGATGAACATAATAATATCAAGTTTGAGATAATTGCCAGCGGCTCTGGTTTACCCTCTTCTGATCTTGTTAATCGCTATGATCCTTTTATGTGTCAGGTAGCAGAAACAGAGAATCGTCCTAATTCAGGTCTGGCATTTTATTTATGTGATTTATTATGTAAGAAGCTTAAAGGTAAATTGAAGATTGACAGTAAACCGGATATCGGTACCCACTACATTGTAGAGCTGCCGCTGCCTGCGACGGAGTCGCGTGGTGAGCCATCCGGTATTCTGGAAGACACTCTTTTCAAGCTCAATATCATTAATCCGAGTATTCGGGAAATAATTAATGCAATTATAAGTGAAAACGGCGGAATTTTATTTGATAAAAATCGCGCGTTATTGCAAGATGAGTACGATATATTGATAACGGATTTTGATAAGAAAGCGAGAAAGCCGATATTATTTTTACGTAATGATATTGTTGAACATAAAATGATTACACCCTCTCTTGTGGAATGTAATTATAATTTCAATGATGAGATTCTGAATGCAATTACATTGCTCATCGAACAAAGCTTAACTTCGGACGAGTTTGATGATAGATTCTTACCCGGAGATTCGGGTATTAATACAAGTACACTTTCTGTAGGGGAAGTTGTAGCTTTATATAAAAATCAATTGGCACAAAGTACGTATAACGATTTGTTTGCCACCACAGTACCTCCTGATATAAATAAGATGTACACCGAAGCAGAATTAAGTGAATTGCAGCCACTGGCGCTGACGGTACATCGGGTTAAAGGGGTCTTTGCTGTGCTTGACTTTGATTATCTGAAAACACGGTGTGAAGATATAGAACAGTATATCGCAGACAAAAACAAAATTAAGATTGATGAAGGTATCCGTGAAATCGATGCCATTGTCATTGAATTGCTGCAGCAAGGTAACCACGAGTATGAATAACCTGAATGTTATTATCGCTGATGATCATCCCATTGTTATTTTCGGGATTA