Homologs in group_2242

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17160 FBDBKF_17160 91.9 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_01730 EHELCC_01730 91.9 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_01730 NLDBIP_01730 91.9 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_00305 LHKJJB_00305 91.9 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_00345 HKOGLL_00345 91.9 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
PMI_RS08320 PMI_RS08320 63.6 Proteus mirabilis HI4320 - XRE family transcriptional regulator

Distribution of the homologs in the orthogroup group_2242

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2242

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77626 7.78e-15 72 26 2 164 1 sutR HTH-type transcriptional regulator SutR Escherichia coli (strain K12)
P9WMH7 0.000892 40 30 0 62 1 clgR Transcriptional regulator ClgR Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMH6 0.000892 40 30 0 62 2 clgR Transcriptional regulator ClgR Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05915
Feature type CDS
Gene -
Product XRE family transcriptional regulator
Location 1260088 - 1260645 (strand: 1)
Length 558 (nucleotides) / 185 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2242
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23779 XRE family transcriptional regulator, regulator of sulfur utilization - -

Protein Sequence

MEPSASPPLEIMAATLTQERQRQGRSIADIARSAGIAKSTLSQLESAQGNPGIETLWALCVALNIPFASLFETPKSRVTVLRRGEGIRVSAENAYYHAFLLSSASSVNRRDLYTITAQPGKDRVSEPHMAQVTEHILLMTGSAVAGTLDEPATLLPGDYISYPGDVPHIFKALEPDTTAVMIIEH

Flanking regions ( +/- flanking 50bp)

CAGGTTGAATGAATAAGGCTATTTCCTGTTAATCAAAGAGAGTGAATATTATGGAACCATCTGCCTCTCCACCCCTTGAGATTATGGCAGCGACCCTGACACAGGAGCGCCAGCGCCAGGGGCGCTCAATTGCCGATATAGCACGCAGTGCAGGTATCGCAAAATCCACACTGTCACAGCTGGAATCCGCTCAGGGAAATCCGGGGATTGAGACATTATGGGCACTTTGTGTTGCGCTTAATATCCCGTTTGCCAGTCTGTTTGAAACACCGAAAAGCCGTGTGACGGTACTGCGGCGCGGCGAAGGAATACGGGTCAGTGCAGAAAATGCGTATTATCATGCGTTTTTGCTCTCCTCTGCCTCATCGGTCAACCGCCGTGATCTCTACACCATTACCGCCCAGCCGGGCAAAGATCGTGTGTCCGAGCCGCATATGGCTCAGGTAACAGAGCATATCCTGCTGATGACCGGCAGTGCCGTTGCCGGCACACTTGACGAACCCGCTACCCTGCTGCCCGGTGATTATATTTCCTATCCCGGCGATGTTCCGCATATCTTTAAAGCCCTTGAGCCGGACACTACCGCCGTGATGATTATTGAGCACTGATACATATCCGGTATTCATAAAATCAGGTTTATCGCAAATAATGTTAAATT