Homologs in group_2242

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17160 FBDBKF_17160 63.6 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_01730 EHELCC_01730 63.6 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_01730 NLDBIP_01730 63.6 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_00305 LHKJJB_00305 63.6 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_00345 HKOGLL_00345 63.6 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS05915 F4V73_RS05915 63.6 Morganella psychrotolerans - XRE family transcriptional regulator

Distribution of the homologs in the orthogroup group_2242

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2242

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77626 4.62e-18 80 26 2 169 1 sutR HTH-type transcriptional regulator SutR Escherichia coli (strain K12)
P22753 8.13e-07 48 40 1 65 4 sinR HTH-type transcriptional regulator SinR Bacillus licheniformis
P06533 8.38e-07 48 41 1 62 1 sinR HTH-type transcriptional regulator SinR Bacillus subtilis (strain 168)
P55409 1.76e-06 47 31 0 63 4 NGR_a04070 Uncharacterized HTH-type transcriptional regulator y4dJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
A0QVU1 0.001 40 33 0 63 1 clgR Transcriptional regulator ClgR Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08320
Feature type CDS
Gene -
Product XRE family transcriptional regulator
Location 1816615 - 1817175 (strand: 1)
Length 561 (nucleotides) / 186 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2242
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23779 XRE family transcriptional regulator, regulator of sulfur utilization - -

Protein Sequence

MSSPSAPIEIISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQLISSPKPEVKVIRKGDGFKISAEKAYYHAFLLSSCPNGAKRDIYTVIAQPGKDRVSDPHSKNVTEHILIISGRAIVGTLDNQQELSPGDYICYPGDVTHVLRALEPDTTAVMIIEHHN

Flanking regions ( +/- flanking 50bp)

TATGTTGAACGACATATTTTTTTGCAAGCTGATTTTTGAAGGAAACTATAATGTCATCACCTTCGGCACCCATTGAAATTATTTCTCAATCCATTGCTAGAGAAAGAAAAAAAGCAGGTCTTTCACTTGCAGAAATCGCAAGGCGAGCAGGGATCGCCAAGTCAACGTTATCCCAATTAGAAGCGGGACAAGGTAATCCAAGTATCGAAACCTTATGGGCTATTTGCGTCGCACTCAATATTCCGTTTTCACAACTGATTTCCTCACCTAAACCAGAAGTTAAAGTGATCCGCAAAGGTGATGGATTTAAAATTAGTGCAGAAAAGGCCTATTACCATGCCTTTTTATTGTCATCTTGCCCCAATGGCGCTAAGCGCGATATTTATACGGTTATTGCTCAGCCGGGTAAAGATAGAGTATCAGATCCTCATAGTAAAAATGTCACAGAACATATTCTTATAATTAGCGGTCGTGCCATTGTCGGTACTTTAGATAATCAACAAGAGTTATCTCCCGGTGACTATATTTGTTACCCTGGTGACGTTACTCATGTGCTACGTGCATTAGAGCCAGACACTACCGCTGTCATGATCATTGAACATCACAATTAGTGACAATGGTATTATCGCACTGATTTTTCGGATAACGTCAAAATCAGTGC