Homologs in group_266

Help

7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05150 FBDBKF_05150 88.1 Morganella morganii S1 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
EHELCC_12440 EHELCC_12440 88.1 Morganella morganii S2 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
NLDBIP_12780 NLDBIP_12780 88.1 Morganella morganii S4 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
LHKJJB_12640 LHKJJB_12640 88.1 Morganella morganii S3 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
HKOGLL_11255 HKOGLL_11255 88.1 Morganella morganii S5 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
PMI_RS06475 PMI_RS06475 65.3 Proteus mirabilis HI4320 - PHP domain-containing protein
PMI_RS10965 PMI_RS10965 29.2 Proteus mirabilis HI4320 - PHP domain-containing protein

Distribution of the homologs in the orthogroup group_266

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_266

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O54453 6.89e-128 368 67 0 273 3 rnm 5'-3' exoribonuclease Rnm Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77766 4.28e-125 361 66 0 273 1 rnm 5'-3' exoribonuclease Rnm Escherichia coli (strain K12)
P44176 9.89e-89 268 49 2 273 3 HI_1400 5'-3' exoribonuclease Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7NXD4 3.78e-52 175 39 3 273 1 CV_1693 3',5'-nucleoside bisphosphate phosphatase Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
C8WJZ5 5.85e-20 90 31 7 254 1 phnPP Phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase Eggerthella lenta (strain ATCC 25559 / DSM 2243 / CCUG 17323 / JCM 9979 / KCTC 3265 / NCTC 11813 / VPI 0255 / 1899 B)
Q8EQU6 0.000133 47 39 2 69 3 polC DNA polymerase III PolC-type Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831)
Q895K2 0.000602 45 39 1 61 3 polC DNA polymerase III PolC-type Clostridium tetani (strain Massachusetts / E88)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05605
Feature type CDS
Gene -
Product PHP domain-containing protein
Location 1192300 - 1193160 (strand: -1)
Length 861 (nucleotides) / 286 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_266
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF02811 PHP domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0613 Nucleotide transport and metabolism (F) F 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07053 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] - -

Protein Sequence

MEPENTGIDRECYDLHSHTTASDGILTPEQLLDRALEMGVTVLAITDHDTTDALPVAHHYQQTHNLPLKVINGVEISTLWEHHEIHIVGLNIDIQHPAMTQLLAQQSTRRRERGMQIGERLEKAGIPGTWEEACELAQGGEVTRGHFARVLIARKVESTIPKVFKRFLARGKTGYVPPQWCEISEAVDAIHAAGGQAVLAHPGRYGLSAKWLKRLCDFFKQTGGDAMEVAQCQQAPDERRVLAEYALTYGLKASQGSDFHQPCSWIELGRKLWLPGGVIPVWQDWS

Flanking regions ( +/- flanking 50bp)

AAAAGCCCGGGTAAACAGGCGGTTGTCAGAGAGAATAAAGAGGAGACGCGATGGAGCCGGAAAACACAGGTATAGACCGGGAGTGCTATGATTTGCACAGCCATACCACAGCGTCAGACGGCATTCTGACACCAGAGCAGTTACTGGACAGAGCCCTGGAGATGGGCGTGACAGTGTTAGCGATTACTGATCACGATACGACAGATGCACTTCCTGTTGCGCATCATTATCAGCAGACACATAATTTGCCGCTGAAAGTGATTAATGGTGTTGAAATATCAACGCTGTGGGAACATCATGAAATTCATATTGTCGGGCTGAATATTGATATTCAGCACCCGGCTATGACACAATTATTAGCGCAGCAATCAACACGCCGCCGTGAGCGCGGAATGCAGATAGGCGAGCGCCTGGAGAAGGCCGGTATTCCCGGCACCTGGGAAGAAGCTTGTGAGCTGGCGCAGGGCGGAGAAGTCACCCGCGGGCATTTTGCCAGGGTGTTGATTGCCCGGAAAGTGGAATCCACTATTCCGAAAGTGTTTAAACGCTTTTTAGCCCGTGGAAAAACCGGCTATGTGCCGCCGCAGTGGTGTGAAATCAGTGAGGCGGTTGACGCTATTCATGCCGCCGGTGGTCAGGCGGTGCTGGCGCATCCCGGTCGCTACGGGTTATCCGCCAAATGGCTGAAACGGTTGTGTGATTTCTTTAAACAGACCGGCGGTGATGCCATGGAAGTGGCACAGTGCCAGCAGGCACCGGATGAGCGCCGGGTTCTGGCGGAATATGCGTTAACATACGGATTAAAAGCCTCTCAGGGATCCGATTTTCATCAGCCGTGTTCGTGGATAGAACTGGGCCGTAAATTGTGGTTGCCGGGAGGCGTGATACCAGTCTGGCAGGATTGGTCGTGAAGGATTAACAGAGGAAATACAATGGGCCAGATGTTTCATATCCATCCTGA