Homologs in group_266

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05150 FBDBKF_05150 64.7 Morganella morganii S1 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
EHELCC_12440 EHELCC_12440 64.7 Morganella morganii S2 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
NLDBIP_12780 NLDBIP_12780 64.7 Morganella morganii S4 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
LHKJJB_12640 LHKJJB_12640 64.7 Morganella morganii S3 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
HKOGLL_11255 HKOGLL_11255 64.7 Morganella morganii S5 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
F4V73_RS05605 F4V73_RS05605 65.3 Morganella psychrotolerans - PHP domain-containing protein
PMI_RS10965 PMI_RS10965 29.2 Proteus mirabilis HI4320 - PHP domain-containing protein

Distribution of the homologs in the orthogroup group_266

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_266

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O54453 6.14e-129 371 64 1 287 3 rnm 5'-3' exoribonuclease Rnm Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77766 6.21e-129 371 65 0 280 1 rnm 5'-3' exoribonuclease Rnm Escherichia coli (strain K12)
P44176 1.6e-92 278 51 2 270 3 HI_1400 5'-3' exoribonuclease Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7NXD4 2.11e-55 183 41 4 274 1 CV_1693 3',5'-nucleoside bisphosphate phosphatase Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
C8WJZ5 6.13e-16 79 28 7 254 1 phnPP Phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase Eggerthella lenta (strain ATCC 25559 / DSM 2243 / CCUG 17323 / JCM 9979 / KCTC 3265 / NCTC 11813 / VPI 0255 / 1899 B)
Q58691 0.000359 44 38 3 80 4 MJ1295 Uncharacterized protein MJ1295 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06475
Feature type CDS
Gene -
Product PHP domain-containing protein
Location 1420406 - 1421266 (strand: -1)
Length 861 (nucleotides) / 286 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_266
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02811 PHP domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0613 Nucleotide transport and metabolism (F) F 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07053 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] - -

Protein Sequence

MTELLSDLRVIYDLHSHTTASDGELSPDELIDRAIEKQITVLAITDHDTTAAIQPAKNYIAEKSLPLTLISGVEISTLWENIEIHIVGLQIDIEHQAMTTCLAKQSQCRETRAKMIGERLAKAGIAGAWEGASALAKGGQVTRGHFARFLVNEGHVASVNKVFKRYLAKGKTGYVPPQWCSIGDAVTAIHQAGGVAVLAHPGRYGLSSKWLKRLVLYFKQQGGDAIEVAQCQQPPQEREQHAALAQAYDLKASLGSDFHRPCSWIELGRNLWLPANVEPVWTLWQG

Flanking regions ( +/- flanking 50bp)

GCATACTCTTAAAAATTCGTTGTATCACTGAGGATAAACAGGGAGAAGGAATGACTGAATTGCTATCTGATTTACGCGTGATTTATGATCTGCATAGCCATACTACTGCATCAGATGGCGAGCTCTCACCTGATGAATTAATCGATAGAGCCATTGAAAAACAAATTACGGTATTAGCGATAACCGATCACGATACTACTGCTGCTATCCAACCTGCCAAAAATTATATTGCAGAAAAAAGTTTACCTTTAACTTTGATATCAGGTGTCGAGATATCGACTTTGTGGGAGAATATAGAAATCCATATTGTTGGATTACAGATTGATATCGAACATCAAGCCATGACGACATGCCTAGCAAAACAGAGTCAATGCCGTGAAACTCGCGCTAAAATGATCGGCGAACGTTTAGCTAAAGCGGGTATTGCTGGAGCATGGGAAGGGGCAAGTGCCCTAGCGAAAGGCGGGCAAGTGACACGAGGACACTTTGCGCGTTTTTTGGTTAATGAAGGGCATGTGGCATCGGTCAATAAAGTATTTAAACGCTATTTAGCAAAAGGAAAAACAGGTTATGTACCGCCACAATGGTGCTCAATTGGTGACGCTGTCACGGCTATTCATCAAGCGGGTGGAGTTGCGGTATTGGCACATCCTGGTCGCTATGGTCTATCCTCTAAATGGTTAAAGCGATTAGTGCTTTATTTTAAACAACAAGGTGGTGATGCTATAGAAGTGGCACAATGCCAACAACCACCACAAGAGCGAGAACAACACGCAGCTTTAGCACAAGCTTATGATCTTAAAGCTTCGTTAGGTTCTGATTTTCATCGCCCTTGCTCGTGGATAGAGCTAGGACGTAATTTATGGTTACCCGCTAATGTTGAACCTGTATGGACATTATGGCAGGGATAACATCAAAAAGTCGTTGAGGGATATATGAGCCAACTTTTTTACATTCACCC