Homologs in group_266

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05150 FBDBKF_05150 28.5 Morganella morganii S1 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
EHELCC_12440 EHELCC_12440 28.5 Morganella morganii S2 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
NLDBIP_12780 NLDBIP_12780 28.5 Morganella morganii S4 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
LHKJJB_12640 LHKJJB_12640 28.5 Morganella morganii S3 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
HKOGLL_11255 HKOGLL_11255 28.5 Morganella morganii S5 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
F4V73_RS05605 F4V73_RS05605 29.2 Morganella psychrotolerans - PHP domain-containing protein
PMI_RS06475 PMI_RS06475 29.2 Proteus mirabilis HI4320 - PHP domain-containing protein

Distribution of the homologs in the orthogroup group_266

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_266

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
C8WJZ5 2.63e-43 151 33 4 254 1 phnPP Phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase Eggerthella lenta (strain ATCC 25559 / DSM 2243 / CCUG 17323 / JCM 9979 / KCTC 3265 / NCTC 11813 / VPI 0255 / 1899 B)
P44176 2.68e-19 88 25 6 256 3 HI_1400 5'-3' exoribonuclease Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O54453 4.06e-17 82 26 8 266 3 rnm 5'-3' exoribonuclease Rnm Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77766 9.01e-17 81 26 8 266 1 rnm 5'-3' exoribonuclease Rnm Escherichia coli (strain K12)
Q7NXD4 2.37e-14 74 26 7 261 1 CV_1693 3',5'-nucleoside bisphosphate phosphatase Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
Q58982 3.27e-06 49 32 2 96 4 MJ1587 Uncharacterized protein MJ1587 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q720A2 9.69e-05 47 33 1 68 3 polC DNA polymerase III PolC-type Listeria monocytogenes serotype 4b (strain F2365)
A0AIC1 9.95e-05 47 33 1 68 3 polC DNA polymerase III PolC-type Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CCUG 15529 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8)
Q8Y7G1 0.000102 47 33 1 68 3 polC DNA polymerase III PolC-type Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q92C34 0.000106 47 33 1 68 3 polC DNA polymerase III PolC-type Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q8DRA5 0.000413 45 28 1 85 3 polC DNA polymerase III PolC-type Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q04MH6 0.000413 45 28 1 85 3 polC DNA polymerase III PolC-type Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Q819Y5 0.000475 45 33 1 63 3 polC DNA polymerase III PolC-type Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q038M0 0.000558 45 37 1 67 3 polC DNA polymerase III PolC-type Lacticaseibacillus paracasei (strain ATCC 334 / BCRC 17002 / CCUG 31169 / CIP 107868 / KCTC 3260 / NRRL B-441)
Q88VK2 0.000599 45 34 2 79 3 polC DNA polymerase III PolC-type Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
Q9KA72 0.000735 44 32 2 80 3 polC DNA polymerase III PolC-type Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q97SQ2 0.000743 44 28 1 85 3 polC DNA polymerase III PolC-type Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q9CDT7 0.000778 44 30 2 89 3 polC DNA polymerase III PolC-type Lactococcus lactis subsp. lactis (strain IL1403)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10965
Feature type CDS
Gene -
Product PHP domain-containing protein
Location 2413793 - 2414617 (strand: -1)
Length 825 (nucleotides) / 274 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_266
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02811 PHP domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0613 Nucleotide transport and metabolism (F) F 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K20859 phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase [EC:3.1.4.57] Phosphonate and phosphinate metabolism -

Protein Sequence

MIYADLHVHTNHSDGVCEIKDVLENAFRNGIKTIAITDHDTTNHYDEIYREGERLGLNIVKGVEMSCYDFDVYKKVHVVGLWLNEKTPNVDKLCDNTLNCRDQFHRELILSLNQQGYDICYEDAKKFSKYNIVFKMNIFQALREKYPEEMTKERYKQLFGSKTKIETDLKMGYIPVDEGIAAILQDGGIPILAHPCVYDNYDEIEKYVQFGLKGLEISHSRMKPIDYELTQNYANKFGLLKSGGSDFHDPALLKFGDFGLNQTQFETLKKDANK

Flanking regions ( +/- flanking 50bp)

GATTATTGCGCGACTATTTTTAATGGAAGAATTAACAGAGGTACTTCTTCATGATCTATGCTGATTTACATGTTCACACAAACCATAGTGATGGTGTTTGTGAAATAAAAGATGTCCTTGAAAATGCATTTAGAAACGGCATTAAGACTATTGCGATCACCGATCACGATACTACCAATCATTATGACGAAATTTACCGAGAAGGGGAGCGTCTTGGATTAAATATCGTCAAAGGTGTTGAAATGAGTTGTTATGACTTTGACGTTTATAAAAAAGTCCATGTAGTGGGACTTTGGCTTAACGAAAAAACGCCCAACGTTGACAAGCTGTGTGATAACACTCTCAACTGTCGTGATCAGTTTCACCGAGAATTAATATTATCTCTCAATCAACAAGGCTACGATATTTGTTATGAAGATGCGAAAAAGTTCTCAAAATATAATATCGTTTTTAAAATGAATATATTCCAAGCATTGAGAGAAAAATATCCAGAGGAAATGACCAAAGAGCGTTATAAACAACTTTTTGGCTCTAAAACAAAAATAGAAACAGACTTAAAAATGGGATATATCCCTGTTGATGAAGGAATTGCTGCTATCTTACAAGATGGTGGTATTCCTATACTTGCTCACCCATGTGTCTATGACAACTATGATGAAATAGAAAAATATGTCCAGTTTGGATTGAAAGGATTAGAAATAAGTCATTCTAGAATGAAACCTATCGACTATGAACTGACCCAAAACTATGCTAATAAATTTGGTTTGCTAAAAAGTGGCGGTAGTGACTTCCATGATCCTGCGTTACTTAAATTTGGCGATTTTGGCCTAAATCAAACACAATTTGAGACCTTAAAAAAGGACGCAAATAAATAAGTAATGATCTGACTTGATATAATGAAACGATTAAACGCCCAGATGGTTTA