Orthogroup:group_266


Homologs in group_266

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05150 FBDBKF_05150 Morganella morganii S1 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
EHELCC_12440 EHELCC_12440 Morganella morganii S2 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
NLDBIP_12780 NLDBIP_12780 Morganella morganii S4 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
LHKJJB_12640 LHKJJB_12640 Morganella morganii S3 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
HKOGLL_11255 HKOGLL_11255 Morganella morganii S5 yciV 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain
F4V73_RS05605 F4V73_RS05605 Morganella psychrotolerans - PHP domain-containing protein
PMI_RS06475 PMI_RS06475 Proteus mirabilis HI4320 - PHP domain-containing protein
PMI_RS10965 PMI_RS10965 Proteus mirabilis HI4320 - PHP domain-containing protein

Distribution of group_266 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_266 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_266

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_266.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yciV 5
2 - 3

Product

# Product Occurence
1 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain 5
2 PHP domain-containing protein 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0613 8 F Nucleotide transport and metabolism (F) 5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07053 7 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] - -
K20859 1 phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase [EC:3.1.4.57] Phosphonate and phosphinate metabolism -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02811 8 PHP domain

Annotations of the 21 SwissProt hits

Annotation Number of occurrences
3',5'-nucleoside bisphosphate phosphatase 1
5'-3' exoribonuclease 1
5'-3' exoribonuclease Rnm 2
DNA polymerase III PolC-type 14
Phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase 1
Uncharacterized protein MJ1295 1
Uncharacterized protein MJ1587 1

Protein length

Min length 274
Max length 289
Mean length (sd) 286.4 (5.2)
Median length 289.0

Protein length distribution