Homologs in group_2518

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02180 FBDBKF_02180 93.4 Morganella morganii S1 lsrD autoinducer 2 ABC transporter permease LsrD
EHELCC_02650 EHELCC_02650 93.4 Morganella morganii S2 lsrD autoinducer 2 ABC transporter permease LsrD
NLDBIP_00810 NLDBIP_00810 93.4 Morganella morganii S4 lsrD autoinducer 2 ABC transporter permease LsrD
LHKJJB_01225 LHKJJB_01225 93.4 Morganella morganii S3 lsrD autoinducer 2 ABC transporter permease LsrD
HKOGLL_01265 HKOGLL_01265 93.4 Morganella morganii S5 lsrD autoinducer 2 ABC transporter permease LsrD

Distribution of the homologs in the orthogroup group_2518

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2518

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B1JLQ2 0.0 513 77 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 0.0 513 77 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3F9 0.0 513 77 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FMJ9 0.0 513 77 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TQL7 0.0 511 77 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 0.0 511 77 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 0.0 511 77 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 0.0 511 77 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 0.0 511 77 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
A1JJ53 2.13e-179 502 78 0 324 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q2PBM1 1.25e-173 487 72 0 329 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
Q8ZKQ2 1.79e-171 482 73 0 326 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 1.79e-171 482 73 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 1.79e-171 482 73 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
Q5PJE5 2.49e-171 481 73 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z2X7 7.44e-171 480 73 0 326 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
Q2PBL8 3.69e-170 479 72 0 329 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens
Q7N2D7 1.15e-169 477 72 0 329 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
B1LFA0 1.39e-162 459 75 0 324 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
P0AFS2 1.42e-162 459 75 0 324 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 1.42e-162 459 75 0 324 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
P0AFS1 1.42e-162 459 75 0 324 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 1.42e-162 459 75 0 324 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 1.42e-162 459 75 0 324 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 1.42e-162 459 75 0 324 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
Q8X504 5.75e-162 457 75 0 324 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
A6TEB6 5.49e-125 364 67 0 320 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A4WER2 1.59e-117 345 66 0 321 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
P36948 8.3e-42 150 34 2 304 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
P32720 6.01e-29 116 32 2 251 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
P44736 2.97e-26 109 27 4 297 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44885 1.31e-23 102 27 5 287 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P77315 1.59e-22 99 29 1 315 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
P0AGI1 1.82e-22 99 28 2 268 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 1.82e-22 99 28 2 268 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 1.82e-22 99 28 2 268 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
P55569 3.19e-22 98 27 4 273 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q9F9B1 7.85e-21 95 30 3 251 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
Q8G845 1.83e-20 93 33 5 273 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
A7FMJ8 2.81e-20 93 28 6 307 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q2PBM2 3.16e-20 92 27 7 331 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
B1JLQ1 3.38e-20 93 28 6 307 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ0 3.81e-20 93 28 6 307 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 3.81e-20 93 28 6 307 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A4TQL6 5.01e-20 92 28 6 307 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 5.01e-20 92 28 6 307 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 5.01e-20 92 28 6 307 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 5.01e-20 92 28 6 307 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 5.01e-20 92 28 6 307 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
P0AE27 6.73e-20 92 28 2 261 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 6.73e-20 92 28 2 261 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
Q7N2D8 3.1e-19 90 28 4 278 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2PBL9 3.62e-19 90 28 4 278 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
A1JJ54 4.23e-18 87 28 6 302 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q56036 5.21e-18 86 31 6 286 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P23200 5.47e-18 86 32 6 286 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
A4WER3 1.34e-16 82 32 4 228 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)
A6TEB7 1.97e-15 79 31 3 251 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P37772 4.9e-15 78 28 8 309 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
Q1JUP6 8.28e-15 77 27 1 261 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
Q8G846 2.4e-13 73 26 5 285 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
P45045 3.69e-13 73 35 0 148 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AGI7 4e-13 73 34 0 137 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 4e-13 73 34 0 137 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 4e-13 73 34 0 137 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 4e-13 73 34 0 137 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
P39328 4.28e-13 72 29 5 260 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)
Q4J711 7.64e-13 72 26 11 342 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q8Z2X6 2.68e-12 70 27 4 327 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
Q57HE2 7.66e-12 68 27 4 327 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
A9MZG2 8.13e-12 68 27 4 327 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q8ZKQ3 8.89e-12 68 27 4 327 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 8.89e-12 68 27 4 327 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B1LFA1 1.14e-11 68 29 3 272 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
B1IRU6 2.17e-11 67 29 3 272 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 2.17e-11 67 29 3 272 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
P77672 9.62e-11 65 29 3 272 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 9.62e-11 65 29 3 272 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
Q0T4L8 1.18e-10 65 29 3 272 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
Q83RD8 1.25e-10 65 29 3 272 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
Q8XAY8 1.25e-10 65 29 5 278 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
Q57321 2.09e-09 62 24 6 291 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04550
Feature type CDS
Gene lsrD
Product autoinducer 2 ABC transporter permease LsrD
Location 961473 - 962468 (strand: -1)
Length 996 (nucleotides) / 331 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2518
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10557 AI-2 transport system permease protein ABC transporters
Quorum sensing		 -

Protein Sequence

MKRYGWEISLLLLLVAEILLFGMGNPRMLDANVLLFSTSDFICIGLVALPLTLVIVSGGMDISFGATIGLSSIVLGILNQAGVPMIAAIPLTLLTGALCGLVNALLILFTGINPLVITLGTMYLFGGCALLLSGLSGASGFEGIGGFPMAFTDFANQDLYGIPLPLIIFALCVIVFWFYLHRTHPGRNVFLIGQNARVARYSAFPVTRTICLLYAMVGVSAALAAIILVSYFGSARADLGASFLMPAITAVVLGGANIYGGSGSVLGTALAVLLVGFLQQGLQMIGVPNQVSSALSGALLIVAVVGRSVSLHRHHILGWWARKRNRQFVSE

Flanking regions ( +/- flanking 50bp)

GCACGGTTCCTCACTCCGTCCCCGCAGCAGGAGACAAAAAAATGACTGGTATCAAGCGTTACGGCTGGGAAATTTCACTGTTGCTGCTGCTGGTGGCAGAGATCCTGTTATTCGGGATGGGCAACCCGCGCATGCTGGATGCTAATGTGCTGCTGTTCAGTACCAGTGACTTTATCTGTATCGGGCTGGTGGCTCTGCCGCTCACCCTGGTGATAGTCAGCGGCGGAATGGATATCTCATTCGGTGCCACTATCGGATTGTCCTCTATTGTGCTCGGTATTCTGAACCAGGCGGGCGTGCCGATGATTGCCGCCATTCCGCTGACATTGCTGACCGGCGCATTATGCGGGCTGGTTAATGCCCTGCTTATCTTATTTACCGGTATAAACCCGCTGGTTATTACCCTCGGTACTATGTATCTGTTCGGCGGCTGCGCCCTGCTGCTCTCCGGGCTTTCCGGTGCCAGCGGCTTTGAGGGGATCGGCGGCTTCCCGATGGCCTTTACCGATTTTGCCAATCAGGATCTGTACGGCATTCCGCTTCCGCTGATTATTTTTGCCCTCTGTGTGATTGTGTTCTGGTTTTATCTGCACCGCACACATCCCGGGCGTAATGTCTTTCTGATCGGACAAAATGCCCGTGTCGCACGTTACAGCGCCTTTCCGGTGACGCGCACGATTTGTCTGCTTTATGCGATGGTGGGTGTATCCGCCGCTCTCGCTGCCATTATTTTAGTCTCCTATTTCGGCTCTGCCCGTGCCGATCTTGGTGCGTCATTCCTGATGCCGGCAATCACGGCGGTTGTATTAGGCGGCGCAAATATTTACGGCGGTTCCGGCTCTGTTTTAGGAACGGCACTCGCTGTACTGCTGGTTGGTTTCTTACAGCAGGGGCTGCAAATGATTGGTGTACCCAATCAGGTCTCCAGTGCGCTCTCGGGTGCGCTGCTTATTGTTGCCGTTGTTGGTCGTTCTGTATCTTTACACCGACATCACATCCTCGGATGGTGGGCGCGTAAACGCAACAGGCAATTCGTATCAGAGTAAAACACGTCTTTTATCACAGATTTGACGAAATGGAGAAAACCATGAAACCC