Orthogroup:group_2518


Homologs in group_2518

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_02180 FBDBKF_02180 Morganella morganii S1 lsrD autoinducer 2 ABC transporter permease LsrD
EHELCC_02650 EHELCC_02650 Morganella morganii S2 lsrD autoinducer 2 ABC transporter permease LsrD
NLDBIP_00810 NLDBIP_00810 Morganella morganii S4 lsrD autoinducer 2 ABC transporter permease LsrD
LHKJJB_01225 LHKJJB_01225 Morganella morganii S3 lsrD autoinducer 2 ABC transporter permease LsrD
HKOGLL_01265 HKOGLL_01265 Morganella morganii S5 lsrD autoinducer 2 ABC transporter permease LsrD
F4V73_RS04550 F4V73_RS04550 Morganella psychrotolerans lsrD autoinducer 2 ABC transporter permease LsrD

Distribution of group_2518 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2518 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2518

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2518.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lsrD 6

Product

# Product Occurence
1 autoinducer 2 ABC transporter permease LsrD 6

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1172 6 G Carbohydrate transport and metabolism (G) Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K10557 6 AI-2 transport system permease protein ABC transporters
Quorum sensing		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02653 6 Branched-chain amino acid transport system / permease component

Annotations of the 82 SwissProt hits

Annotation Number of occurrences
Autoinducer 2 import system permease protein LsrC 28
Autoinducer 2 import system permease protein LsrD 28
D-allose transport system permease protein AlsC 1
Fructose import permease protein FrcC 1
Fructose import permease protein FruF 1
Fructose import permease protein FruG 1
Galactofuranose transporter permease protein YtfT 1
Galactose/methyl galactoside import permease protein MglC 4
Inner membrane ABC transporter permease protein YjfF 1
L-arabinose ABC transporter permease protein AraH 1
L-arabinose transport system permease protein AraH 2
Probable ABC transporter permease protein YphD 1
Probable ABC transporter permease protein y4mJ 1
Ribose import permease protein RbsC 5
Xylose transport system permease protein XylH 5
Xylose/arabinose import permease protein XylH 1

Protein length

Min length 331
Max length 334
Mean length (sd) 333.5 (1.2)
Median length 334.0

Protein length distribution