Homologs in group_2516

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02170 FBDBKF_02170 95.9 Morganella morganii S1 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase
EHELCC_02640 EHELCC_02640 95.9 Morganella morganii S2 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase
NLDBIP_00820 NLDBIP_00820 95.9 Morganella morganii S4 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase
LHKJJB_01215 LHKJJB_01215 95.9 Morganella morganii S3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase
HKOGLL_01255 HKOGLL_01255 95.9 Morganella morganii S5 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase

Distribution of the homologs in the orthogroup group_2516

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2516

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N2D6 0.0 521 84 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q8ZKQ0 0.0 520 84 0 291 2 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57HD9 0.0 520 84 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Salmonella choleraesuis (strain SC-B67)
Q8Z2X9 0.0 519 84 0 290 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Salmonella typhi
Q5PJE3 0.0 519 84 0 290 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A9MZG5 0.0 516 84 0 290 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
A1JJ51 0.0 512 83 0 290 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
B1JLQ4 0.0 508 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ3 0.0 508 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3F7 0.0 508 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FMK1 0.0 508 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TQL9 0.0 508 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Yersinia pestis (strain Pestoides F)
Q1CN19 0.0 508 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Yersinia pestis bv. Antiqua (strain Nepal516)
A9R0S6 0.0 508 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Yersinia pestis bv. Antiqua (strain Angola)
Q7CG47 0.0 508 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Yersinia pestis
Q1C134 0.0 508 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Yersinia pestis bv. Antiqua (strain Antiqua)
P76143 0.0 507 82 0 291 1 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Escherichia coli (strain K12)
B1XEA5 0.0 507 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Escherichia coli (strain K12 / DH10B)
Q8XAZ1 0.0 507 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Escherichia coli O157:H7
B1IRU3 0.0 506 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A070 0.0 506 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Escherichia coli O9:H4 (strain HS)
A7ZLX4 0.0 506 82 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Escherichia coli O139:H28 (strain E24377A / ETEC)
B1LF98 6.39e-180 500 81 0 291 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Escherichia coli (strain SMS-3-5 / SECEC)
Q9CLF7 1.2e-178 497 80 0 290 3 PM1278 Uncharacterized aldolase PM1278 Pasteurella multocida (strain Pm70)
A6TEB4 3.07e-178 496 80 0 290 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A4WER0 5.93e-177 493 80 0 290 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Enterobacter sp. (strain 638)
Q83L15 2.24e-158 444 83 0 256 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Shigella flexneri
Q0T4L4 3.55e-158 444 83 0 256 3 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Shigella flexneri serotype 5b (strain 8401)
O30128 1.62e-34 129 30 5 261 3 AF_0108 Putative 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase 2 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q57843 1.19e-32 124 30 5 256 1 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A6UTT2 1.82e-31 121 29 5 259 3 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)
O67506 4.72e-31 119 29 6 260 3 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Aquifex aeolicus (strain VF5)
A4FYB3 5.28e-30 117 29 5 252 3 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
A9A799 9.19e-30 116 29 5 252 3 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Methanococcus maripaludis (strain C6 / ATCC BAA-1332)
A6VJZ0 1.03e-29 116 29 5 252 3 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
O26679 7.25e-29 114 29 6 248 3 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
A6USC8 8.87e-29 114 29 5 252 3 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)
Q6LZE3 1.66e-28 113 29 5 244 3 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
O30009 5.74e-26 106 30 4 243 3 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase 1 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q9HSB8 2.16e-25 105 30 5 248 3 aroA' 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Q9V2I6 1.62e-24 102 29 9 264 3 fba Fructose-bisphosphate aldolase class 1 Pyrococcus abyssi (strain GE5 / Orsay)
O57840 7.59e-24 101 28 9 267 3 fba Fructose-bisphosphate aldolase class 1 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q9YG90 1.93e-23 99 32 11 271 3 fba Probable fructose-bisphosphate aldolase class 1 Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
P58314 3.61e-23 99 28 9 266 1 fba Fructose-bisphosphate aldolase class 1 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q8J308 5.11e-23 99 28 9 266 1 fba Fructose-bisphosphate aldolase class 1 Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
A0JC77 9.54e-17 81 28 6 245 1 griI 2-amino-4,5-dihydroxy-6-oxo-7-(phosphonooxy)heptanoate synthase Streptomyces griseus
B1VTI8 9.54e-17 81 28 6 245 3 griI 2-amino-4,5-dihydroxy-6-oxo-7-(phosphonooxy)heptanoate synthase Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
Q97U03 1e-14 75 27 11 270 3 SSO3226 Uncharacterized aldolase SSO3226 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q9HRI2 3.11e-14 74 24 5 250 3 VNG_0683C Fructose-bisphosphate aldolase class 1 Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B0R3Y0 3.11e-14 74 24 5 250 1 fba1 Fructose-bisphosphate aldolase class 1 Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
P58315 4.71e-12 68 24 11 260 1 fba Fructose-bisphosphate aldolase class 1 Thermoproteus tenax (strain ATCC 35583 / DSM 2078 / JCM 9277 / NBRC 100435 / Kra 1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04540
Feature type CDS
Gene lsrF
Product 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase
Location 959507 - 960388 (strand: -1)
Length 882 (nucleotides) / 293 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2516
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF01791 DeoC/LacD family aldolase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1830 Carbohydrate transport and metabolism (G) G Fructose-bisphosphate aldolase class Ia, DhnA family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08321 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245] Quorum sensing -

Protein Sequence

MADLDDIRDGKDFGLTTPQKNTLYTLKGCGSLDWGMQSRLARIFNPQDNRTVMLAFDHGYFQGPTTGLERIDINIAPLFEHTDVLMCTRGILRSQVPVATNKPVVLRASGANSILTELSNEAVAVAMDDAVRLNVAAVAAQVYIGTEHEHQSIKNIISMVDAGMRVGMPVMAVTGVGKDMARDQRYFSLASRIAAEMGAQIIKTYFVEEGFERITAGCPVPIVIAGGKKLPEDEALDMCFRAIDQGASGVDMGRNIFQSEDPVAMMKAVHAVVHGGESAKQAHALFLSEKNKG

Flanking regions ( +/- flanking 50bp)

AACATTAATGACTACAACTTTTAACCACCACAATTTACGGGGAGAACTCCATGGCTGATTTAGATGATATCCGTGACGGTAAAGATTTCGGGCTGACCACCCCGCAGAAAAACACCCTTTATACCCTTAAAGGCTGTGGCTCGCTGGACTGGGGAATGCAATCGCGCCTTGCCCGCATTTTTAATCCGCAAGATAACAGAACCGTGATGCTGGCCTTTGACCACGGCTATTTCCAGGGACCGACCACCGGTCTTGAGCGCATTGATATTAATATCGCTCCGCTCTTTGAACACACCGATGTTCTGATGTGTACGCGCGGGATCCTGCGCTCACAAGTGCCGGTTGCCACCAACAAACCGGTTGTCCTGCGTGCATCCGGCGCTAACTCAATTCTGACCGAGCTTTCCAATGAAGCTGTCGCGGTGGCAATGGATGATGCGGTACGCCTGAATGTGGCAGCAGTTGCGGCACAGGTGTATATCGGGACAGAGCATGAGCATCAGTCCATCAAAAACATCATCAGTATGGTGGATGCGGGAATGCGTGTGGGTATGCCGGTGATGGCGGTAACGGGTGTGGGTAAAGATATGGCGCGTGATCAGCGTTATTTCTCACTCGCCAGCCGCATTGCCGCCGAAATGGGCGCGCAGATAATCAAAACCTATTTTGTTGAAGAAGGTTTCGAACGCATTACTGCCGGGTGTCCGGTGCCGATTGTTATCGCCGGCGGGAAAAAACTGCCGGAAGATGAAGCACTCGATATGTGTTTCCGTGCCATAGACCAGGGCGCCTCCGGTGTGGACATGGGACGCAATATCTTCCAGTCCGAAGACCCGGTTGCCATGATGAAAGCCGTTCATGCCGTTGTCCATGGTGGCGAGAGCGCAAAACAGGCTCATGCATTGTTCCTGAGCGAAAAGAATAAGGGGTAAATTTTGAACGTAACATTAGTCGAAATTAATGTAAAAGCAGACAAAGTGGA