Homologs in group_987

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05455 FBDBKF_05455 76.8 Morganella morganii S1 hypF carbamoyltransferase HypF
EHELCC_12135 EHELCC_12135 76.8 Morganella morganii S2 hypF carbamoyltransferase HypF
NLDBIP_12475 NLDBIP_12475 76.8 Morganella morganii S4 hypF carbamoyltransferase HypF
LHKJJB_12335 LHKJJB_12335 76.8 Morganella morganii S3 hypF carbamoyltransferase HypF
HKOGLL_10950 HKOGLL_10950 76.8 Morganella morganii S5 hypF carbamoyltransferase HypF
PMI_RS07305 PMI_RS07305 57.9 Proteus mirabilis HI4320 hypF carbamoyltransferase HypF

Distribution of the homologs in the orthogroup group_987

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_987

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P30131 0.0 658 50 11 757 1 hypF Carbamoyltransferase HypF Escherichia coli (strain K12)
Q02987 0.0 573 45 16 758 1 hypF Carbamoyltransferase HypF Rhodobacter capsulatus
O07451 1.47e-165 501 40 18 799 3 hypF2 Carbamoyltransferase HypF2 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q43950 4.51e-158 481 40 17 788 3 hypF Carbamoyltransferase HypF Azotobacter chroococcum mcd 1
Q55638 7.79e-157 477 39 17 782 3 hypF Carbamoyltransferase HypF Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P28156 2.58e-151 462 39 16 760 3 hypF Carbamoyltransferase HypF Rhizobium leguminosarum bv. viciae
P40596 3.51e-151 463 41 17 777 3 hypF Carbamoyltransferase HypF Azotobacter vinelandii
Q58123 5.53e-136 423 34 20 772 3 hypF Probable carbamoyltransferase HypF Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P45805 4.41e-45 169 35 5 369 5 hypF1 Carbamoyltransferase HypF homolog Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P39153 1.36e-06 54 29 5 154 1 ywlC Threonylcarbamoyl-AMP synthase Bacillus subtilis (strain 168)
Q65UA8 2.27e-05 47 38 1 71 3 acyP Acylphosphatase Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
A8MC09 4.1e-05 46 34 2 92 3 acyP Acylphosphatase Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167)
Q1MFT8 5.92e-05 45 32 2 87 3 acyP Acylphosphatase Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)
Q038C3 0.000124 45 34 2 73 3 acyP Acylphosphatase Lacticaseibacillus paracasei (strain ATCC 334 / BCRC 17002 / CCUG 31169 / CIP 107868 / KCTC 3260 / NRRL B-441)
Q6LLJ9 0.000208 46 24 3 158 3 tsaC Threonylcarbamoyl-AMP synthase Photobacterium profundum (strain SS9)
A5G1Y9 0.000557 43 38 4 88 3 acyP Acylphosphatase Acidiphilium cryptum (strain JF-5)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03840
Feature type CDS
Gene hypF
Product carbamoyltransferase HypF
Location 813148 - 815448 (strand: 1)
Length 2301 (nucleotides) / 766 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_987
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00708 Acylphosphatase
PF01300 Telomere recombination
PF07503 HypF finger
PF17788 HypF Kae1-like domain
PF22521 Carbamoyltransferase, Kae1-like Domain, second subdomain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0068 Posttranslational modification, protein turnover, chaperones (O) O Hydrogenase maturation factor HypF (carbamoyltransferase)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04656 hydrogenase maturation protein HypF - -

Protein Sequence

MIAGVAIRVKGKVQGVGFRPAVWQIAHQMALCGDVSNDSEGVLVHLLKSADVAGFIARLQAQCPPLARIDSIEQHDYTFAQHPAAFVICASGHGEMDTEIIPDAATCDACRAELFDPQNRRYRYPFINCTHCGPRFTIIRSMPYDRPNTAMSVFPFCPVCQKEYEDPGDRRFHAQPNACPDCGPQIWLTGVNQQVVARHNDAIAESVRQLHNGNILAMQGLGGFHLAVDAQNSDAVAKLRVRKHRPAKPFAVMIPSVDWLAACLGHEPDAALVTLLKSPAAPIVLIEEPRLFAALSPLIAPNLCEIGIMLPSNPLQHLLLHDSQRPLVMTSGNASGHTPALDSTTAFEQLNTIADVFLLHNREIIQRADDSLVRYQKDGNQMLRRARGYVPDTIDISAVTGRETPSILALGGDLKNAFCFLHHHQLITGPHLGDLDDLSVQAQQEASLALFQQIYQVHPQAVAADAHPGYVSHKTAMALAAAWQVPFIPVYHHHAHIAACLAEHGWRQEDGVVVGIALDGLGFGADNQLWGGEVLAGDYRNMIRTGGLPAVSLPGGDKAATQPWRNLLAHLHHAGLSADSPLSARLPEQGCELLIKAIEQGINSPRVSSCGRLFDAVACALGLISGPVSWEGEAACALESHALQCHNQGGMRTTKSLPVNPDNTINLLPLWMMLADGSLTSAEKAFRFHVMLTNTFAKMADNAAEQYQTNTVVLSGGVFNNRLLRSFIKAGLTHRHILEPRQLPCGDGGIAAGQAVIAALSGFGTC

Flanking regions ( +/- flanking 50bp)

CTATGTTGATTGAAATCAGGGTATCGGTTGAAATCAGTCTGGAGCGTTTTATGATTGCGGGTGTGGCAATACGGGTTAAAGGTAAAGTTCAGGGCGTCGGGTTTCGTCCCGCAGTCTGGCAGATAGCGCACCAGATGGCGCTGTGCGGTGATGTCAGTAATGACAGCGAAGGGGTGCTTGTTCACCTGTTAAAAAGTGCCGATGTTGCCGGGTTTATTGCCCGGTTACAGGCTCAGTGTCCGCCACTCGCGCGGATAGATAGTATTGAGCAGCACGACTATACCTTTGCACAGCATCCGGCGGCCTTTGTTATTTGTGCCAGCGGGCATGGTGAGATGGACACGGAAATTATTCCGGATGCCGCCACCTGTGATGCCTGCCGCGCAGAATTATTTGACCCGCAAAACCGCCGCTACCGTTATCCGTTCATAAATTGCACCCATTGCGGACCGCGTTTCACTATTATCCGCAGCATGCCGTACGACCGCCCCAATACGGCGATGTCTGTTTTCCCGTTTTGTCCGGTATGTCAGAAAGAGTATGAAGACCCGGGCGACCGGCGCTTCCATGCGCAGCCGAATGCCTGTCCTGACTGCGGACCACAAATCTGGCTGACGGGTGTGAATCAGCAGGTGGTGGCGCGTCATAACGATGCAATCGCTGAGAGTGTCAGGCAACTGCACAATGGCAATATTCTGGCTATGCAGGGGCTTGGCGGCTTTCATCTTGCTGTTGATGCACAAAACAGTGATGCGGTCGCGAAATTACGGGTTCGCAAACACCGCCCGGCAAAACCGTTTGCTGTGATGATCCCCTCAGTCGACTGGCTGGCTGCCTGTCTGGGACACGAACCTGATGCGGCGCTGGTGACATTATTAAAAAGCCCGGCAGCGCCGATTGTGTTAATTGAAGAACCCCGGCTGTTCGCTGCATTATCACCGCTGATAGCACCGAATTTGTGTGAAATCGGCATTATGTTACCGTCTAACCCATTGCAGCATCTGCTGCTGCATGACAGTCAGCGCCCGTTGGTGATGACATCCGGTAATGCCTCCGGTCATACACCGGCGCTTGATAGCACCACCGCATTTGAACAACTTAATACGATTGCCGATGTCTTTTTGCTGCATAACCGCGAAATCATTCAGCGTGCAGATGATTCCCTTGTTCGTTATCAGAAAGACGGTAACCAGATGCTGCGCCGGGCGCGGGGCTATGTGCCGGATACGATCGATATCAGTGCAGTGACCGGCAGAGAAACGCCGTCAATACTGGCGTTGGGCGGGGATCTGAAAAATGCATTTTGTTTTTTGCATCATCACCAGCTGATTACCGGACCCCATCTTGGTGATCTTGATGACCTTTCCGTGCAGGCGCAACAGGAGGCATCACTGGCACTGTTTCAGCAGATTTATCAGGTGCACCCTCAGGCAGTCGCTGCGGATGCGCATCCCGGGTATGTCAGCCATAAAACCGCAATGGCGCTCGCCGCAGCCTGGCAGGTGCCGTTTATACCTGTGTATCATCATCATGCCCATATTGCTGCCTGTCTGGCAGAGCACGGCTGGCGGCAGGAGGATGGTGTGGTTGTCGGTATTGCGCTGGATGGCCTTGGGTTTGGTGCAGACAATCAGTTGTGGGGCGGCGAAGTACTGGCGGGGGATTACCGTAACATGATCCGCACCGGCGGCCTGCCCGCCGTGAGTTTGCCGGGCGGAGACAAAGCGGCAACACAGCCGTGGCGTAATTTGCTGGCGCACCTGCATCATGCCGGACTATCAGCGGACTCACCGTTGTCAGCCCGTTTGCCTGAACAGGGCTGTGAATTACTGATAAAAGCCATTGAACAGGGAATTAATTCGCCCCGCGTATCATCTTGCGGGCGATTGTTCGATGCGGTTGCCTGTGCGCTGGGATTGATCTCCGGTCCGGTAAGCTGGGAAGGTGAAGCCGCCTGTGCATTGGAATCACATGCGTTACAGTGTCACAACCAGGGTGGAATGAGAACAACGAAGTCACTACCGGTTAATCCGGATAATACGATTAATCTGCTTCCGCTCTGGATGATGCTGGCGGATGGTTCGCTGACATCAGCTGAAAAAGCCTTCCGCTTCCATGTCATGCTGACCAATACTTTTGCAAAAATGGCAGATAACGCCGCAGAACAGTATCAGACCAATACCGTTGTGCTCTCCGGCGGGGTATTTAATAACCGGTTATTACGTAGCTTTATTAAGGCAGGATTAACTCACCGCCACATTCTTGAACCCCGCCAGCTTCCGTGCGGGGATGGCGGGATCGCTGCCGGACAGGCAGTTATTGCCGCCCTGAGTGGTTTCGGAACATGTTAACGGCACGTTTTGATACAGTAAATATTTGTAATTTTAATCATTACTGAATT