Homologs in group_1025

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05770 FBDBKF_05770 92.2 Morganella morganii S1 ribE riboflavin synthase subunit alpha
EHELCC_11820 EHELCC_11820 92.2 Morganella morganii S2 ribE riboflavin synthase subunit alpha
NLDBIP_12160 NLDBIP_12160 92.2 Morganella morganii S4 ribE riboflavin synthase subunit alpha
LHKJJB_12020 LHKJJB_12020 92.2 Morganella morganii S3 ribE riboflavin synthase subunit alpha
HKOGLL_10635 HKOGLL_10635 92.2 Morganella morganii S5 ribE riboflavin synthase subunit alpha
PMI_RS06775 PMI_RS06775 75.2 Proteus mirabilis HI4320 - riboflavin synthase

Distribution of the homologs in the orthogroup group_1025

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1025

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFU9 8.94e-108 311 71 0 202 3 ribE Riboflavin synthase Shigella flexneri
P0AFU8 8.94e-108 311 71 0 202 1 ribC Riboflavin synthase Escherichia coli (strain K12)
P45273 7.08e-89 263 61 0 202 3 ribE Riboflavin synthase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8KA22 4.84e-75 228 54 0 199 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57212 2.55e-72 221 51 0 199 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AX1 2.1e-61 194 48 0 199 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q9Z820 2.35e-51 167 48 3 199 3 ribE Riboflavin synthase Chlamydia pneumoniae
P50854 2.01e-40 140 40 4 211 3 ribE Riboflavin synthase Actinobacillus pleuropneumoniae
Q9PJZ1 5.48e-38 133 40 4 202 3 ribE Riboflavin synthase Chlamydia muridarum (strain MoPn / Nigg)
P21578 1.32e-37 132 35 2 191 1 luxY Yellow fluorescent protein Aliivibrio fischeri
Q9Y7P0 1.45e-36 130 37 1 207 1 rib5 Riboflavin synthase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O84410 3.11e-36 129 40 4 202 3 ribE Riboflavin synthase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P80893 7.1e-36 128 37 4 199 1 Y1-BFP Blue fluorescence protein Aliivibrio fischeri
P51961 1.81e-35 127 37 4 211 1 ribE Riboflavin synthase Photobacterium phosphoreum
O67604 3.06e-35 127 36 4 201 3 ribE Riboflavin synthase Aquifex aeolicus (strain VF5)
P16440 5.41e-32 118 35 2 206 1 ribE Riboflavin synthase Bacillus subtilis (strain 168)
P9WK35 1.45e-31 117 39 8 205 1 ribE Riboflavin synthase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WK34 1.45e-31 117 39 8 205 3 ribE Riboflavin synthase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P65328 1.45e-31 117 39 8 205 3 ribE Riboflavin synthase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q2YN92 1.91e-30 114 38 5 193 1 ribE Riboflavin synthase Brucella abortus (strain 2308)
A5DB51 2.19e-30 115 34 4 226 2 RIB5 Riboflavin synthase Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324)
Q44680 6.75e-29 110 34 3 211 3 ribE Riboflavin synthase Bacillus amyloliquefaciens
P38145 1.32e-24 100 34 2 195 1 RIB5 Riboflavin synthase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q01993 4.09e-24 98 34 3 194 3 ribE Riboflavin synthase Photobacterium leiognathi
P25082 6.68e-24 97 31 2 183 1 luxL Lumazine protein Photobacterium phosphoreum
Q06877 1.48e-23 95 33 2 184 1 lumP Lumazine protein Photobacterium leiognathi

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03555
Feature type CDS
Gene -
Product riboflavin synthase
Location 759579 - 760238 (strand: 1)
Length 660 (nucleotides) / 219 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1025
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00677 Lumazine binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0307 Coenzyme transport and metabolism (H) H Riboflavin synthase alpha chain

Kegg Ortholog Annotation(s)

Protein Sequence

MFTGIVQGKGPVVAIEEKENFRVHTVKFPPELLGGIETGASVAHNGCCLTVTKIDGDLISFDLVKETLRLTNLGSLKTGDNVNLERAAKYGDEIGGHIMSGHIVTTAEIAKIFVSENNYQIWLRIEDKMLMKYILHKGFVGIDGISLTIGDVVNNRFCVHLIPETCTRTTLGKKRLGDKVNIELDPQTQAIVDTVERVLLQKTQQSQESQTPPATTEPA

Flanking regions ( +/- flanking 50bp)

CCTGAATGACATTAGGTATAAATTTATTTATTTACTGACTGGAGATCCGCATGTTTACCGGGATTGTACAAGGCAAAGGCCCCGTCGTCGCCATTGAAGAAAAAGAAAACTTTCGTGTTCACACTGTGAAATTTCCGCCGGAATTACTGGGCGGCATAGAAACGGGCGCCTCGGTTGCACACAACGGCTGCTGTCTGACAGTCACAAAAATAGACGGTGATTTAATCAGTTTTGATCTGGTTAAGGAAACGTTAAGACTGACAAACCTCGGCAGTCTGAAAACCGGTGACAATGTTAATCTGGAAAGAGCCGCTAAATATGGTGATGAAATCGGCGGACATATTATGTCCGGCCATATTGTTACCACGGCGGAAATTGCTAAAATTTTTGTATCAGAAAATAATTATCAGATTTGGCTGCGCATCGAAGATAAAATGCTGATGAAATATATTCTGCATAAAGGATTTGTCGGCATTGACGGTATCAGCCTGACTATCGGTGATGTGGTCAATAATCGCTTTTGTGTGCATCTGATCCCGGAAACCTGTACCCGCACGACGCTGGGCAAAAAGCGTCTGGGGGATAAAGTGAATATTGAGCTTGATCCGCAGACACAGGCGATTGTTGATACTGTTGAGCGTGTACTGCTGCAGAAAACACAGCAATCACAAGAGTCTCAGACACCGCCTGCGACAACAGAACCCGCATAGTCCTGACAGATTATATGTAAAAAAATCCGGCACTGGTTTGGTATCAGTCC