Homologs in group_2178

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16395 FBDBKF_16395 82.5 Morganella morganii S1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
EHELCC_08260 EHELCC_08260 82.5 Morganella morganii S2 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
NLDBIP_08585 NLDBIP_08585 82.5 Morganella morganii S4 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
LHKJJB_05680 LHKJJB_05680 82.5 Morganella morganii S3 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
HKOGLL_05235 HKOGLL_05235 82.5 Morganella morganii S5 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD
PMI_RS07810 PMI_RS07810 47.8 Proteus mirabilis HI4320 - N-acetylmuramoyl-L-alanine amidase

Distribution of the homologs in the orthogroup group_2178

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2178

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75820 1.09e-74 232 45 3 262 1 amiD N-acetylmuramoyl-L-alanine amidase AmiD Escherichia coli (strain K12)
P82973 3.48e-17 80 41 2 104 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Enterobacter cloacae
Q92IC3 1.05e-14 75 28 9 210 3 RC0497 Putative N-acetylmuramoyl-L-alanine amidase RC0497 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P82974 3e-13 70 36 2 104 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Citrobacter freundii
P13016 6.81e-13 68 36 2 104 1 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Escherichia coli (strain K12)
E1W818 1.72e-12 67 35 2 104 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain SL1344)
P0CL03 6.1e-12 66 34 2 104 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P44624 3.53e-09 58 28 10 187 3 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02920
Feature type CDS
Gene -
Product N-acetylmuramoyl-L-alanine amidase
Location 620050 - 620883 (strand: 1)
Length 834 (nucleotides) / 277 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2178
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01471 Putative peptidoglycan binding domain
PF01510 N-acetylmuramoyl-L-alanine amidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3023 Cell wall/membrane/envelope biogenesis (M) M N-acetyl-anhydromuramyl-L-alanine amidase AmpD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01447 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] - -

Protein Sequence

MWRCVCLVCALVLTGCSNQSHFIDRGDFIVDPRNIKEPWLSKPNDYLVFHYTALNDEASLRVLTAGGVSVQYLVPTIPARRDGKPVVIQLIPEGSEAWHAGKSYWRGDTSLNKNSIGVEIVNLGVEKLSVGQRWLPYQTGQIDLIVKLAQDVIERHNIRPENVVGHSDIAPQRKLDPGPMFPWEYLAKRGIGAWPETRDVQRFLAGRHPSDKINVRELQQALKQYGYDIAVTGKMDGKTRNVIKAFQMHFRSDKVNGAADADTLARVKALVYRYGSK

Flanking regions ( +/- flanking 50bp)

CCGGTAACCATACCGGATAAGATAACATGTTGTTTCACAGGATAAAAAAGATGTGGCGTTGCGTGTGTTTAGTGTGTGCGCTGGTATTAACAGGATGCAGTAATCAGAGTCATTTTATTGATCGCGGTGATTTTATTGTCGATCCGCGGAATATCAAAGAGCCGTGGCTGTCAAAACCCAATGATTATCTTGTTTTTCATTATACCGCGCTCAATGATGAGGCATCATTACGGGTGCTGACTGCCGGAGGGGTGAGTGTGCAGTATCTGGTACCGACAATCCCGGCGCGGCGTGACGGTAAACCGGTGGTGATACAGCTGATCCCCGAAGGCAGCGAGGCGTGGCATGCCGGGAAAAGTTACTGGCGGGGAGACACCAGTCTGAATAAAAACTCCATTGGTGTTGAGATTGTAAACCTCGGTGTGGAAAAATTATCTGTCGGTCAGCGCTGGCTGCCGTATCAGACCGGGCAAATCGACCTGATTGTGAAGCTGGCTCAGGATGTTATTGAGCGTCATAATATCCGCCCTGAAAATGTCGTGGGACACAGTGATATTGCGCCGCAGCGTAAACTGGATCCCGGACCGATGTTTCCGTGGGAATACCTGGCGAAGCGCGGGATAGGCGCCTGGCCTGAAACACGCGATGTACAGCGCTTTCTTGCCGGACGTCATCCGTCAGATAAGATAAATGTCCGTGAGTTACAGCAGGCGCTGAAACAGTATGGTTATGATATTGCGGTTACCGGCAAAATGGACGGAAAAACCCGTAATGTTATCAAAGCGTTCCAGATGCATTTCCGATCAGATAAAGTGAATGGTGCAGCAGATGCCGACACACTGGCGAGAGTGAAGGCATTGGTTTACCGTTATGGCTCTAAATAATATTACCCTTATTCATTCAAACTGCAGGTTCGTTGGCGGCATGAAGCCTG