Homologs in group_377

Help

7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14290 FBDBKF_14290 75.9 Morganella morganii S1 - Colicin pore forming domain-containing protein
EHELCC_07990 EHELCC_07990 75.9 Morganella morganii S2 - Colicin pore forming domain-containing protein
NLDBIP_08315 NLDBIP_08315 75.9 Morganella morganii S4 - Colicin pore forming domain-containing protein
LHKJJB_05950 LHKJJB_05950 75.9 Morganella morganii S3 - Colicin pore forming domain-containing protein
HKOGLL_04965 HKOGLL_04965 75.9 Morganella morganii S5 - Colicin pore forming domain-containing protein
PMI_RS18765 PMI_RS18765 38.7 Proteus mirabilis HI4320 - colicin-like pore-forming protein
PMI_RS18775 PMI_RS18775 25.4 Proteus mirabilis HI4320 - colicin-like pore-forming protein

Distribution of the homologs in the orthogroup group_377

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_377

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P06716 9.98e-67 226 58 0 187 1 cia Colicin-Ia Escherichia coli
P04479 1.28e-57 202 49 0 202 3 cib Colicin-Ib Escherichia coli
Q47502 3.9e-31 128 32 2 235 3 cka Colicin-K Escherichia coli
P21178 4.79e-31 127 35 1 197 3 cea Colicin-E1* Shigella sonnei
P02978 1.75e-30 125 35 1 197 1 cea Colicin-E1 Escherichia coli
Q47500 3.41e-29 122 32 4 235 3 cfa Colicin-5 Escherichia coli
Q47125 4.28e-28 119 34 6 236 3 cta Colicin-10 Escherichia coli
P05819 2.38e-13 75 29 4 202 1 cba Colicin-B Escherichia coli
P04480 3.79e-11 68 29 4 211 1 caa Colicin-A Citrobacter freundii
Q47108 1.09e-10 64 29 3 196 1 caa Colicin-A (Fragment) Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02615
Feature type CDS
Gene -
Product colicin-like pore-forming protein
Location 551345 - 552580 (strand: 1)
Length 1236 (nucleotides) / 411 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_377
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF01024 Colicin pore forming domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1579 General function prediction only (R) R Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain

Protein Sequence

MAYRYEDTTPFERDVMASMGYHWKGEGWQKATDNGDTMVVTGWVGDSPTEPGQYTHTWDRDLADINTSPNPVWDDADDGWMHPVDEDIRKERRDDSAKKLDYLTKLEAEIRKDITEIISNINKTKEQNENTNDVLENATLTLIIKKLQLQKERIINLLNEARKRTSDTERKRLSDESWFYNSELNRRMQDKTQGEIKKEWEKGKAITREIDSQAQTIKTAENDAKKAEDEFSQVKTAVKFTADFYKEIFKVHGEKAEQLAKALADQAKGKKIRNADDALKAYEKHKANINKKINAQDRKAIATALESIQLADIGNNFKQFSRGMGVLGHTINAFDWIGELIKAVKTDNWRPFFVKTEVIAAGNAATIVVAFVFSVLLGNPVGLLGYGLIMAGAGALINDELVENANQFWGI

Flanking regions ( +/- flanking 50bp)

GGCAAGAGCTGATTTTTGTCCGTTATTTATTTGGATAAAAGGAATAGGTTATGGCTTACCGATATGAAGACACCACACCGTTTGAAAGAGATGTAATGGCCTCCATGGGTTATCACTGGAAAGGCGAAGGTTGGCAGAAAGCAACAGATAATGGTGATACTATGGTTGTTACCGGATGGGTCGGCGATAGCCCGACAGAACCCGGCCAGTACACTCATACCTGGGATAGGGATCTTGCAGATATAAATACATCTCCGAACCCTGTGTGGGATGATGCAGATGACGGCTGGATGCATCCGGTGGATGAAGACATCAGAAAGGAACGCCGGGATGACTCAGCAAAAAAATTAGATTACTTAACAAAACTGGAAGCAGAAATAAGAAAGGATATTACTGAGATAATAAGCAATATAAATAAAACAAAGGAACAAAATGAAAATACAAACGATGTTTTAGAAAATGCGACATTAACATTAATTATAAAAAAATTGCAGTTACAGAAAGAGCGAATAATCAACTTGCTGAATGAGGCAAGAAAAAGAACATCTGATACAGAACGGAAAAGATTAAGTGATGAATCCTGGTTTTATAACAGTGAATTAAACAGAAGAATGCAGGATAAAACACAAGGTGAAATAAAAAAAGAATGGGAAAAAGGAAAAGCGATAACAAGAGAAATTGATTCTCAGGCGCAGACGATAAAAACTGCTGAAAACGACGCAAAAAAAGCAGAAGATGAATTTAGTCAGGTTAAAACCGCTGTGAAGTTTACTGCTGATTTTTACAAAGAAATATTTAAAGTGCATGGTGAAAAAGCAGAGCAGCTGGCTAAGGCGCTGGCGGATCAGGCTAAAGGGAAGAAAATCCGCAATGCGGATGATGCATTAAAGGCTTATGAAAAACACAAAGCTAATATCAATAAAAAAATCAACGCCCAAGACCGTAAGGCGATTGCAACAGCATTAGAATCAATCCAATTAGCTGATATCGGAAATAATTTTAAGCAATTTAGCCGGGGAATGGGCGTTTTGGGTCACACTATCAATGCTTTTGATTGGATAGGTGAATTAATAAAAGCCGTAAAAACAGATAATTGGCGCCCATTCTTTGTCAAGACTGAAGTAATAGCAGCCGGAAATGCGGCTACTATAGTGGTCGCATTTGTATTCAGCGTACTTTTAGGAAATCCCGTCGGACTTCTTGGCTATGGATTGATAATGGCTGGTGCCGGGGCATTGATTAATGATGAATTGGTAGAAAATGCGAATCAGTTTTGGGGGATTTAAGGCATAAAAAATTAAAGGCTGCTTATTTTGTTAGCAGCCTTTTTGTAACC