Homologs in group_345

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14290 FBDBKF_14290 100.0 Morganella morganii S1 - Colicin pore forming domain-containing protein
EHELCC_07990 EHELCC_07990 100.0 Morganella morganii S2 - Colicin pore forming domain-containing protein
NLDBIP_08315 NLDBIP_08315 100.0 Morganella morganii S4 - Colicin pore forming domain-containing protein
HKOGLL_04965 HKOGLL_04965 100.0 Morganella morganii S5 - Colicin pore forming domain-containing protein
F4V73_RS02615 F4V73_RS02615 75.9 Morganella psychrotolerans - colicin-like pore-forming protein
PMI_RS18765 PMI_RS18765 40.8 Proteus mirabilis HI4320 - colicin-like pore-forming protein
PMI_RS18775 PMI_RS18775 23.5 Proteus mirabilis HI4320 - colicin-like pore-forming protein

Distribution of the homologs in the orthogroup group_345

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_345

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P06716 1.82e-62 215 55 0 186 1 cia Colicin-Ia Escherichia coli
P04479 1.11e-54 194 42 3 254 3 cib Colicin-Ib Escherichia coli
Q47500 5.22e-31 127 34 3 235 3 cfa Colicin-5 Escherichia coli
Q47502 6.21e-31 127 38 0 182 3 cka Colicin-K Escherichia coli
P02978 1.03e-28 120 36 2 184 1 cea Colicin-E1 Escherichia coli
P21178 1.93e-28 120 35 0 180 3 cea Colicin-E1* Shigella sonnei
Q47125 7.96e-28 118 34 5 236 3 cta Colicin-10 Escherichia coli
P05819 6.41e-11 67 27 4 195 1 cba Colicin-B Escherichia coli
P04480 6.02e-10 64 28 4 207 1 caa Colicin-A Citrobacter freundii
Q47108 2.86e-09 60 28 3 194 1 caa Colicin-A (Fragment) Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_05950
Feature type CDS
Gene -
Product Colicin pore forming domain-containing protein
Location 198199 - 199434 (strand: -1)
Length 1236 (nucleotides) / 411 (amino acids)
In genomic island -

Contig

Accession ZDB_362
Length 257361 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_345
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01024 Colicin pore forming domain

Protein Sequence

MTNRYEDTTPFERDVMTSMGYHWKGEGWQKASDNGETMVVTGWTGDIPADSSRITHIWDQNIADMNTSPNPVWDDADDGWMHPVDEEIRKERREESARKLKYLTALEEDINKDISEIIKNIAEVNEKIKNASDVLESATLNVIVKKLQLQKEKVINLLNEARKRKSDAERKRLSDESWFYNSELNRRMQDKTDDEIKKEWKKGKSITQEIVLQDERIEIAENDVIKEEDEFSQVKTAVKFTADFYKEVFSVYGDKAEQLAGALAEQAKGKKIRDIDDALKAYEKYRNNFNKKMNSEDRKAIVAALESIKSAEIAKNFTKFSKGMGVLSHAINAFDWVGELIKSVKTDNWRPFFVKTEVIAAGNAATVVVAFIFSVLLGNPVGLIGYGLIMAGTGVLIDDELAEKANLFWGI

Flanking regions ( +/- flanking 50bp)

GCCGGGAGCCGATTTGTATTCACTGAGCATTTTTATAAAAGGAATATGTTATGACGAATCGATACGAAGACACCACACCGTTTGAACGTGATGTGATGACCTCCATGGGATATCACTGGAAAGGAGAGGGCTGGCAAAAAGCATCAGATAATGGCGAGACTATGGTTGTTACCGGATGGACCGGGGATATCCCGGCAGACAGCAGCAGGATAACTCATATCTGGGATCAGAATATTGCGGATATGAACACATCCCCCAATCCTGTATGGGATGATGCCGATGATGGCTGGATGCATCCGGTGGATGAAGAAATCAGAAAGGAACGCCGCGAAGAGTCTGCGAGAAAATTAAAATACTTAACTGCGCTTGAAGAAGATATAAATAAAGACATCAGTGAGATAATAAAAAATATAGCTGAGGTAAATGAAAAAATAAAGAACGCAAGTGATGTTTTGGAAAGTGCCACACTAAACGTTATTGTGAAAAAACTTCAGTTACAAAAAGAAAAGGTAATTAATTTACTGAATGAAGCAAGAAAAAGAAAATCTGATGCAGAAAGAAAGAGATTAAGTGATGAGTCATGGTTTTATAACAGTGAGCTTAACAGGCGTATGCAGGATAAAACCGATGATGAGATAAAAAAGGAATGGAAAAAAGGAAAAAGCATAACACAAGAAATTGTTTTGCAGGATGAACGAATAGAAATAGCAGAAAATGACGTTATAAAAGAAGAAGATGAGTTCAGCCAGGTTAAAACAGCCGTGAAATTTACAGCAGATTTTTATAAAGAAGTGTTCAGCGTATACGGAGACAAGGCGGAACAATTAGCTGGTGCTCTGGCAGAGCAGGCAAAAGGGAAGAAAATCCGGGATATTGATGATGCATTGAAAGCTTACGAAAAATATAGGAATAACTTTAATAAGAAAATGAATTCTGAAGATCGCAAGGCTATTGTCGCGGCGTTAGAGTCAATCAAGTCAGCAGAAATCGCAAAAAATTTTACAAAATTCAGCAAGGGTATGGGGGTTCTGAGTCATGCAATCAATGCATTTGATTGGGTTGGTGAATTGATTAAATCTGTAAAAACAGATAATTGGCGGCCATTTTTTGTTAAAACCGAAGTCATCGCAGCCGGGAATGCTGCGACTGTTGTAGTTGCATTCATTTTCAGTGTATTGCTGGGAAATCCCGTCGGCCTTATAGGCTATGGTTTGATAATGGCCGGCACCGGAGTATTGATTGATGATGAACTGGCTGAAAAAGCTAATCTGTTTTGGGGGATTTAATTTATAAAAACAGAGGCTGCCTATTTCTGTGGTAGCCTTTTTATAAGAAT