Homologs in group_345

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14290 FBDBKF_14290 40.8 Morganella morganii S1 - Colicin pore forming domain-containing protein
EHELCC_07990 EHELCC_07990 40.8 Morganella morganii S2 - Colicin pore forming domain-containing protein
NLDBIP_08315 NLDBIP_08315 40.8 Morganella morganii S4 - Colicin pore forming domain-containing protein
LHKJJB_05950 LHKJJB_05950 40.8 Morganella morganii S3 - Colicin pore forming domain-containing protein
HKOGLL_04965 HKOGLL_04965 40.8 Morganella morganii S5 - Colicin pore forming domain-containing protein
F4V73_RS02615 F4V73_RS02615 38.7 Morganella psychrotolerans - colicin-like pore-forming protein
PMI_RS18775 PMI_RS18775 25.3 Proteus mirabilis HI4320 - colicin-like pore-forming protein

Distribution of the homologs in the orthogroup group_345

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_345

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P04479 1.4e-52 192 49 0 186 3 cib Colicin-Ib Escherichia coli
P06716 6.12e-52 191 51 0 186 1 cia Colicin-Ia Escherichia coli
Q47502 1.7e-32 134 39 2 184 3 cka Colicin-K Escherichia coli
Q47500 8.81e-32 132 38 2 184 3 cfa Colicin-5 Escherichia coli
Q47125 1.34e-26 116 35 2 184 3 cta Colicin-10 Escherichia coli
P21178 6.63e-26 115 33 2 180 3 cea Colicin-E1* Shigella sonnei
P02978 1.38e-24 110 33 0 180 1 cea Colicin-E1 Escherichia coli
P05819 3.82e-20 97 28 6 252 1 cba Colicin-B Escherichia coli
Q47108 2.85e-15 78 29 5 204 1 caa Colicin-A (Fragment) Escherichia coli
P04480 1.86e-14 80 31 4 177 1 caa Colicin-A Citrobacter freundii
P08083 1.04e-08 61 27 4 175 1 cna Colicin-N Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18765
Feature type CDS
Gene -
Product colicin-like pore-forming protein
Location 2052123 - 2053817 (strand: -1)
Length 1695 (nucleotides) / 564 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_345
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01024 Colicin pore forming domain
PF06958 S-type Pyocin

Protein Sequence

MLITRANVDQYPSLPDDIIRDIKQNGLIYDTEGGADEDGGWITEGGVVSVDNGVERLIVTPATSNNLPWSKIPTLADSDKDEYPFPNMGNGGSSPFNPNTKFKVNKPQIPVIISSNNNKLTNSSNKEELVTNKGVMHFNGVVIEQLETFKKKYFLTKDAINLIQDKLIESVISLYSKENRIDDNKVNSVKFMEFSEFDNNSFNEFDLMSTIPAENLINNPDLMSGKLNEIAKNNGTINVNARMAIIKENNKANAALVGTDGVLVTKEVPVYKVNYAANSYHVDIKNLGIEYLLRPTSSPSGLGLQGNIIQKHSNENKKFSYPEKIELPNKVENKRIDVPYPHQFNDAIIVFPKNSNLPPLYVYSGFPAIKLKDKDPRPQQEKEFNDIKDGVKFTISFYEKVTQEFGKKAAQLSRELAEQAKGKTIRSVEDALRTYEKYGQNINNKINAKDRAAIIKALESIDAKQLASNLGKFSKGLGYTNHAINAVELLVEFKKAVKTGNWRPFFVKATAITAGMAAVALTAFAFSLIVGGPVGILGYALIIATVSALIDDALVEKVSSAIGI

Flanking regions ( +/- flanking 50bp)

TGTATTTACACACAGGGTTTGTGTGCTATCAAACATAAAAAGGAGTTTATATGCTTATTACAAGAGCTAACGTTGATCAATACCCATCGCTCCCAGATGATATTATTCGTGATATAAAACAAAATGGCTTAATTTATGATACGGAAGGAGGGGCTGATGAAGATGGTGGTTGGATCACTGAAGGGGGAGTGGTCAGTGTAGATAATGGGGTGGAACGTTTAATTGTGACGCCAGCTACATCAAATAACTTACCTTGGTCAAAAATACCCACTCTTGCTGATAGTGATAAAGATGAATATCCATTTCCTAATATGGGTAATGGCGGATCATCACCTTTTAATCCAAATACTAAATTTAAAGTGAATAAACCGCAAATACCCGTTATTATTTCTAGCAATAATAATAAACTAACTAACAGCTCAAATAAGGAAGAATTAGTTACAAATAAAGGTGTGATGCATTTCAATGGCGTTGTTATTGAGCAACTAGAGACATTTAAAAAGAAATATTTTCTTACAAAGGATGCTATTAATTTAATTCAAGATAAATTAATAGAGTCTGTTATTAGTTTATACAGCAAAGAAAACCGTATTGATGATAATAAGGTGAACTCAGTAAAATTTATGGAGTTTAGTGAATTTGATAATAATTCATTTAATGAGTTTGACCTTATGTCTACCATTCCTGCAGAAAACTTAATTAATAATCCTGATTTGATGTCTGGAAAACTTAATGAAATTGCAAAAAACAATGGAACAATTAATGTTAATGCAAGAATGGCTATAATTAAAGAAAACAATAAAGCGAATGCCGCGTTAGTTGGAACTGATGGTGTATTGGTGACAAAAGAAGTTCCTGTATATAAAGTTAATTACGCTGCTAATAGCTATCATGTAGATATAAAGAATTTAGGAATAGAATATTTACTTAGGCCCACTAGTTCCCCTAGCGGCCTTGGTTTACAAGGAAATATTATTCAAAAACATTCAAATGAAAATAAAAAATTCTCATATCCAGAAAAAATAGAATTACCTAATAAGGTAGAAAACAAAAGGATAGATGTACCATATCCGCATCAATTTAATGATGCAATCATTGTGTTTCCTAAAAATTCAAATTTACCCCCTTTATATGTTTATTCAGGCTTTCCTGCAATTAAACTGAAGGATAAAGATCCTCGTCCTCAGCAGGAAAAAGAGTTTAATGACATCAAAGATGGTGTGAAATTTACAATTTCATTTTATGAGAAAGTAACTCAAGAATTTGGTAAAAAGGCGGCTCAATTATCTAGAGAATTAGCAGAACAAGCAAAAGGAAAAACAATCAGAAGTGTAGAGGATGCATTGCGTACATATGAAAAATATGGGCAGAATATTAATAATAAAATTAATGCCAAAGATAGAGCTGCTATTATAAAAGCATTAGAATCTATTGATGCAAAACAGTTAGCTTCAAACTTAGGTAAATTTAGTAAAGGGCTTGGATATACCAATCACGCGATTAATGCCGTGGAATTACTTGTTGAATTTAAAAAAGCGGTTAAAACAGGAAATTGGCGTCCATTTTTTGTTAAAGCCACTGCAATTACTGCTGGTATGGCAGCAGTGGCATTGACAGCCTTTGCCTTTAGTTTAATTGTCGGTGGGCCTGTTGGAATTTTAGGGTATGCCCTCATCATTGCAACAGTTAGTGCCTTGATTGACGATGCTTTGGTTGAAAAAGTCAGCAGTGCGATAGGTATTTAATATGTAGGCTAATAGGATAATCGATTTTAATTGGTTATCCTATTTTTTGT