Homologs in group_30

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02780 FBDBKF_02780 18.6 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_03250 EHELCC_03250 18.6 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_00210 NLDBIP_00210 18.6 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_01825 LHKJJB_01825 18.6 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_01865 HKOGLL_01865 18.6 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS03270 F4V73_RS03270 20.6 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS04355 F4V73_RS04355 18.2 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS05245 F4V73_RS05245 18.9 Morganella psychrotolerans - LysR substrate-binding domain-containing protein
F4V73_RS05520 F4V73_RS05520 18.7 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS06440 F4V73_RS06440 15.0 Morganella psychrotolerans - LysR substrate-binding domain-containing protein
F4V73_RS10230 F4V73_RS10230 16.8 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS13185 F4V73_RS13185 16.0 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS13375 F4V73_RS13375 15.1 Morganella psychrotolerans - LysR family transcriptional regulator
PMI_RS03935 PMI_RS03935 17.3 Proteus mirabilis HI4320 yafC DNA-binding transcriptional regulator YafC

Distribution of the homologs in the orthogroup group_30

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_30

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37682 7.9e-14 74 22 6 270 3 yiaU Uncharacterized HTH-type transcriptional regulator YiaU Escherichia coli (strain K12)
P27111 3.14e-11 66 24 7 211 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
Q8X4M5 5.28e-11 65 24 7 211 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
Q9JXW7 4.65e-09 60 23 11 302 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9JPU9 1.6e-08 58 21 12 307 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup C (strain 8013)
P37499 4.23e-07 53 22 8 265 3 yybE Uncharacterized HTH-type transcriptional regulator YybE Bacillus subtilis (strain 168)
P0C6D1 2.84e-06 51 24 4 179 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F9F9 3.38e-06 51 24 4 179 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
O35038 3.62e-06 51 28 1 125 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
P52689 7.26e-06 50 18 7 314 3 ltrA Probable HTH-type transcriptional regulator LtrA Klebsiella pneumoniae
Q57748 8.51e-06 50 26 11 311 3 MJ0300 Uncharacterized HTH-type transcriptional regulator MJ0300 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P96725 9.64e-06 50 21 7 296 3 ywqM Uncharacterized HTH-type transcriptional regulator YwqM Bacillus subtilis (strain 168)
Q9S4Y7 4.69e-05 47 19 9 276 3 allS HTH-type transcriptional activator AllS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PCH2 4.69e-05 47 19 9 276 3 allS HTH-type transcriptional activator AllS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57S50 5.33e-05 47 19 9 276 3 allS HTH-type transcriptional activator AllS Salmonella choleraesuis (strain SC-B67)
P77700 6.26e-05 47 22 2 133 1 yahB Uncharacterized HTH-type transcriptional regulator YahB Escherichia coli (strain K12)
P67662 6.7e-05 47 22 11 291 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli (strain K12)
P67663 6.7e-05 47 22 11 291 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P67664 6.7e-05 47 22 11 291 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O157:H7
Q8Z8R3 8.93e-05 47 19 9 276 3 allS HTH-type transcriptional activator AllS Salmonella typhi
Q47005 0.000111 46 28 2 127 3 nac Nitrogen assimilation regulatory protein nac Escherichia coli (strain K12)
Q4G384 0.000117 46 26 3 176 3 rbcR Probable RuBisCO transcriptional regulator Emiliania huxleyi
Q8KA72 0.000146 46 22 9 274 3 metR HTH-type transcriptional regulator MetR Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P42427 0.000157 45 32 0 71 3 tfdT HTH-type transcriptional regulator TfdT Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
P46068 0.000158 46 23 1 126 2 dsdC HTH-type transcriptional regulator DsdC Escherichia coli (strain K12)
A0T0V5 0.00018 46 25 0 122 3 rbcR-A Probable RuBisCO transcriptional regulator Thalassiosira pseudonana
P52696 0.000182 46 25 0 121 3 ybhD Uncharacterized HTH-type transcriptional regulator YbhD Escherichia coli (strain K12)
P0ACQ9 0.000215 45 25 4 158 3 tdcA HTH-type transcriptional regulator TdcA Shigella flexneri
P0ACQ7 0.000215 45 25 4 158 3 tdcA HTH-type transcriptional regulator TdcA Escherichia coli (strain K12)
P0ACQ8 0.000215 45 25 4 158 3 tdcA HTH-type transcriptional regulator TdcA Escherichia coli O157:H7
P75836 0.000287 45 20 5 278 3 ycaN Uncharacterized HTH-type transcriptional regulator YcaN Escherichia coli (strain K12)
Q08597 0.000317 45 28 2 132 3 nac Nitrogen assimilation regulatory protein nac Klebsiella aerogenes
P52665 0.000514 43 33 0 78 3 budR HTH-type transcriptional regulator BudR (Fragment) Klebsiella aerogenes
P30864 0.000778 44 24 2 121 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01700
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 373390 - 374304 (strand: -1)
Length 915 (nucleotides) / 304 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_30
Orthogroup size 15
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MNINHNVFKISNLIAFHSIVDHGSFSLAAKLTQRSQGQLSQIVSTIEEACGTGLFIRTSSGVQLNEQGHIFAQESRKYLESYNIFLKNISNLSEPDDKSIVIYAPPGFIHYLSSHIIQPLSVKFPYISVTMKKCHSGDINNYDHLLREADIILSFVPSLHPMTVNTELELEMGFYTGIHYAENTDLSHPLHLLKEKCIVVDSYGSEHNVWRYCDNEKINKLDIQPKFQCHDIISAIIMATNNIGIVYVPKIVADEYVNTGKLRPLLSSFNLKVPYYIIYKKEKNINKNITPVRSFIIKHVNSMN

Flanking regions ( +/- flanking 50bp)

AACTTTAGAGTATATCATACCGGTTCGGTATATTAATAAGCAGGTTAAAAATGAACATTAATCATAATGTTTTTAAAATAAGTAATCTGATTGCATTTCATTCTATTGTTGATCATGGTAGTTTTTCTCTGGCAGCTAAGCTTACACAACGTTCTCAGGGCCAGTTAAGCCAGATAGTCAGTACAATAGAAGAAGCCTGTGGTACAGGGCTGTTTATACGAACAAGCTCCGGTGTCCAACTAAATGAACAAGGACATATTTTTGCACAGGAATCCCGGAAATACCTGGAATCCTATAATATTTTTTTGAAAAACATCAGTAACTTATCTGAACCTGATGATAAATCTATAGTAATTTATGCACCACCGGGTTTTATTCATTATTTATCATCCCATATAATACAGCCATTATCAGTTAAATTTCCCTATATTTCAGTGACAATGAAAAAATGTCACTCCGGTGATATTAATAACTACGACCACCTTCTCCGTGAAGCCGATATTATTTTATCTTTTGTTCCTTCACTACACCCTATGACTGTTAATACAGAATTAGAATTAGAAATGGGTTTCTACACCGGTATACATTATGCAGAAAACACTGATCTATCTCATCCATTACATTTATTAAAAGAGAAATGTATTGTTGTTGACAGCTATGGTTCAGAACATAATGTATGGCGATATTGTGATAATGAAAAAATAAACAAATTAGATATACAACCAAAGTTTCAATGTCATGACATCATATCTGCCATTATTATGGCAACAAATAATATAGGAATTGTCTATGTCCCTAAAATAGTAGCGGATGAATATGTGAATACAGGAAAACTCAGACCGCTACTTTCCTCATTTAATCTTAAAGTGCCATATTATATTATTTATAAAAAAGAAAAAAATATAAATAAAAACATAACACCCGTTCGATCCTTTATTATAAAACATGTAAATTCAATGAATTAGGAATGGTATGGCATTACAAAACACATAGATATCAATACAATTACTTACAT