Homologs in group_30

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02780 FBDBKF_02780 17.5 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_03250 EHELCC_03250 17.5 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_00210 NLDBIP_00210 17.5 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_01825 LHKJJB_01825 17.5 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_01865 HKOGLL_01865 17.5 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS01700 F4V73_RS01700 15.0 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS03270 F4V73_RS03270 20.9 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS04355 F4V73_RS04355 23.3 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS05245 F4V73_RS05245 16.0 Morganella psychrotolerans - LysR substrate-binding domain-containing protein
F4V73_RS05520 F4V73_RS05520 21.1 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS10230 F4V73_RS10230 18.3 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS13185 F4V73_RS13185 17.5 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS13375 F4V73_RS13375 31.3 Morganella psychrotolerans - LysR family transcriptional regulator
PMI_RS03935 PMI_RS03935 20.9 Proteus mirabilis HI4320 yafC DNA-binding transcriptional regulator YafC

Distribution of the homologs in the orthogroup group_30

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_30

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P34818 4.26e-29 115 30 5 271 3 trpI HTH-type transcriptional regulator TrpI Pseudomonas syringae pv. syringae
P11720 3.56e-28 113 29 5 277 1 trpI HTH-type transcriptional regulator TrpI Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P45099 1.98e-25 105 24 4 292 3 gcvA Glycine cleavage system transcriptional activator homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A9F6 1.4e-24 103 24 5 297 1 gcvA Glycine cleavage system transcriptional activator Escherichia coli (strain K12)
P0A9F7 1.4e-24 103 24 5 297 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9F8 1.4e-24 103 24 5 297 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O157:H7
P05051 6.28e-22 96 29 8 290 3 ampR HTH-type transcriptional activator AmpR Enterobacter cloacae
P14145 1.44e-21 95 29 9 298 3 ampR HTH-type transcriptional activator AmpR Rhodobacter capsulatus
P52660 4.26e-21 94 27 6 290 3 blaA HTH-type transcriptional regulator BlaA Proteus vulgaris
P12529 2.92e-20 91 28 7 289 1 ampR HTH-type transcriptional activator AmpR Citrobacter freundii
P24734 1.85e-19 89 26 6 288 1 ampR HTH-type transcriptional activator AmpR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P52676 2.87e-19 89 26 7 290 3 nmcR Carbapenem-hydrolyzing beta-lactamase transcriptional activator Enterobacter cloacae
P42507 7.87e-19 87 37 0 125 3 hvrB AhcY transcriptional activator HvrB Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
P45461 2.18e-18 86 27 7 301 3 ampR HTH-type transcriptional activator AmpR Yersinia enterocolitica
P52658 3.57e-17 82 27 6 290 3 ampR HTH-type transcriptional activator AmpR Citrobacter koseri
P55576 6.73e-17 82 26 9 297 3 NGR_a02420 Uncharacterized HTH-type transcriptional regulator y4mQ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q57083 2.73e-16 80 23 6 290 1 perR HTH-type transcriptional regulator PerR Escherichia coli (strain K12)
P52683 1.51e-15 78 22 6 300 3 smeR Carbapenem-hydrolyzing beta-lactamase transcriptional activator Serratia marcescens
O69772 8.41e-13 70 26 7 286 3 ampR HTH-type transcriptional activator AmpR Providencia stuartii
P46068 9.46e-12 67 23 5 291 2 dsdC HTH-type transcriptional regulator DsdC Escherichia coli (strain K12)
P30864 7.65e-11 65 26 3 196 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
P37641 1.52e-10 64 23 8 296 3 yhjC Uncharacterized HTH-type transcriptional regulator YhjC Escherichia coli (strain K12)
P96725 3.18e-10 63 25 10 261 3 ywqM Uncharacterized HTH-type transcriptional regulator YwqM Bacillus subtilis (strain 168)
Q8X4M5 1.49e-09 61 31 3 144 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
P52689 1.61e-09 61 23 5 257 3 ltrA Probable HTH-type transcriptional regulator LtrA Klebsiella pneumoniae
P27111 2.06e-09 60 30 3 144 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
P0A9G1 3.5e-09 60 26 8 241 3 metR HTH-type transcriptional regulator MetR Shigella flexneri
P0A9F9 3.5e-09 60 26 8 241 1 metR HTH-type transcriptional regulator MetR Escherichia coli (strain K12)
P0A9G0 3.5e-09 60 26 8 241 3 metR HTH-type transcriptional regulator MetR Escherichia coli O157:H7
O68014 7.48e-09 59 31 8 183 1 benM HTH-type transcriptional regulator BenM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P0A2Q4 9.34e-09 58 25 10 287 3 metR HTH-type transcriptional regulator MetR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q5 9.34e-09 58 25 10 287 3 metR HTH-type transcriptional regulator MetR Salmonella typhi
P94387 2.09e-08 58 22 7 260 3 ycgK Uncharacterized HTH-type transcriptional regulator YcgK Bacillus subtilis (strain 168)
P52696 3.17e-08 57 24 6 190 3 ybhD Uncharacterized HTH-type transcriptional regulator YbhD Escherichia coli (strain K12)
Q6B936 1.09e-07 55 25 8 256 3 rbcR Probable RuBisCO transcriptional regulator Gracilaria tenuistipitata var. liui
P07774 1.31e-07 55 31 4 141 1 catM HTH-type transcriptional regulator CatM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P45349 2.26e-07 54 31 4 129 3 metR HTH-type transcriptional regulator MetR Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P25544 6.98e-07 53 24 12 304 3 rbcR RuBisCO operon transcriptional regulator Allochromatium vinosum
A0T0V5 7.6e-07 53 31 3 132 3 rbcR-A Probable RuBisCO transcriptional regulator Thalassiosira pseudonana
P39647 8.13e-07 53 22 10 265 1 cysL HTH-type transcriptional regulator CysL Bacillus subtilis (strain 168)
A5F9F9 8.55e-07 53 25 8 248 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
P0C6D1 1.4e-06 52 29 1 131 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q5N5I5 3.6e-06 51 26 6 180 3 cmpR HTH-type transcriptional activator CmpR Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
Q9F1R2 3.6e-06 51 26 6 180 1 cmpR HTH-type transcriptional activator CmpR Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P20668 4.33e-06 50 28 2 125 1 gltC Transcriptional dual regulator GltC Bacillus subtilis (strain 168)
P72131 4.44e-06 50 26 9 286 1 ptxR HTH-type transcriptional regulator PtxR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P48271 8.35e-06 50 33 6 138 3 rbcR Probable RuBisCO transcriptional regulator Cyanophora paradoxa
Q9JPU9 9.04e-06 50 23 6 201 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup C (strain 8013)
Q00678 1.02e-05 49 28 2 140 3 nocR Regulatory protein NocR Agrobacterium fabrum (strain C58 / ATCC 33970)
Q57748 1.53e-05 49 25 2 125 3 MJ0300 Uncharacterized HTH-type transcriptional regulator MJ0300 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P76250 1.98e-05 48 25 3 183 1 dmlR HTH-type transcriptional regulator DmlR Escherichia coli (strain K12)
Q9JXW7 2.03e-05 48 22 3 198 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P45105 2.52e-05 48 28 9 191 3 cysB HTH-type transcriptional regulator CysB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P33651 2.64e-05 48 29 3 126 3 blaA HTH-type transcriptional regulator BlaA Streptomyces cacaoi
Q47141 3.03e-05 48 26 2 146 1 hcaR Hca operon transcriptional activator HcaR Escherichia coli (strain K12)
P35112 4.27e-05 47 27 2 140 3 nocR Regulatory protein NocR Agrobacterium tumefaciens (strain T37)
P94501 4.78e-05 47 21 9 292 1 gltR HTH-type transcriptional regulator GltR Bacillus subtilis (strain 168)
P73123 4.98e-05 47 29 5 138 3 rbcR Probable RuBisCO transcriptional regulator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A0A0H2ZDG9 5.45e-05 47 23 8 296 3 PA14_22550 HTH-type transcriptional repressor PA14_22550 Pseudomonas aeruginosa (strain UCBPP-PA14)
A1JI47 5.99e-05 47 26 6 183 3 hdfR HTH-type transcriptional regulator HdfR Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P77744 6.71e-05 47 26 1 119 3 abgR HTH-type transcriptional regulator AbgR Escherichia coli (strain K12)
P0A4T3 9.02e-05 47 25 6 197 1 occR Octopine catabolism/uptake operon regulatory protein OccR Rhizobium radiobacter
P0A4T4 9.02e-05 47 25 6 197 1 occR Octopine catabolism/uptake operon regulatory protein OccR Agrobacterium tumefaciens (strain Ach5)
O32186 0.000131 46 22 10 268 3 yusT Uncharacterized HTH-type transcriptional regulator YusT Bacillus subtilis (strain 168)
Q8YQ82 0.000131 46 29 3 137 3 rbcR Probable RuBisCO transcriptional regulator Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q3MCB5 0.000137 46 29 3 137 3 rbcR Probable RuBisCO transcriptional regulator Trichormus variabilis (strain ATCC 29413 / PCC 7937)
P42722 0.000152 46 25 13 277 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P77171 0.000153 46 27 3 151 3 ydcI Uncharacterized HTH-type transcriptional regulator YdcI Escherichia coli (strain K12)
P55181 0.000211 45 25 8 186 3 yxjO Uncharacterized HTH-type transcriptional regulator YxjO Bacillus subtilis (strain 168)
P52693 0.000255 45 24 2 143 3 ntcB Probable nitrogen assimilation transcriptional activator Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
B1JQ39 0.000271 45 26 5 167 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66G51 0.000271 45 26 5 167 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TRF4 0.000271 45 26 5 167 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pestis (strain Pestoides F)
Q1CNN4 0.000271 45 26 5 167 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pestis bv. Antiqua (strain Nepal516)
A9R8E7 0.000271 45 26 5 167 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZAA7 0.000271 45 26 5 167 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pestis
B2JZG4 0.000271 45 26 5 167 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1CBT5 0.000271 45 26 5 167 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pestis bv. Antiqua (strain Antiqua)
A7FD20 0.000271 45 26 5 167 3 hdfR HTH-type transcriptional regulator HdfR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
P77559 0.000274 45 28 2 131 3 ynfL Uncharacterized HTH-type transcriptional regulator YnfL Escherichia coli (strain K12)
Q1XDT2 0.000302 45 25 9 260 3 rbcR Probable RuBisCO transcriptional regulator Neopyropia yezoensis
O78432 0.000368 45 24 10 254 3 rbcR Probable RuBisCO transcriptional regulator Guillardia theta
P51205 0.000437 44 25 9 260 3 rbcR Probable RuBisCO transcriptional regulator Porphyra purpurea
P03030 0.000623 44 23 5 238 3 lysR Transcriptional activator protein LysR Escherichia coli (strain K12)
Q765S2 0.000635 44 27 2 119 3 allS HTH-type transcriptional activator AllS Klebsiella pneumoniae
P52669 0.000669 44 23 10 248 3 ttuA HTH-type transcriptional regulator TtuA Agrobacterium vitis
P96194 0.000701 42 40 0 50 3 None Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region Azotobacter vinelandii
P94403 0.000701 44 23 4 145 3 bsdA HTH-type transcriptional regulator BsdA Bacillus subtilis (strain 168)
P70773 0.000826 43 25 4 171 3 argP HTH-type transcriptional regulator ArgP Aeromonas salmonicida
P56885 0.000898 43 22 12 302 3 cbbR HTH-type transcriptional regulator CbbR Sinorhizobium medicae (strain WSM419)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06440
Feature type CDS
Gene -
Product LysR substrate-binding domain-containing protein
Location 1343655 - 1344536 (strand: -1)
Length 882 (nucleotides) / 293 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_30
Orthogroup size 15
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator Biofilm formation - Escherichia coli -

Protein Sequence

MRELPPLSALRAFLAACQSDSFSEAAEKLNVTHGVISKQVQVAETWFGATLFERKGSRRVATPYALTLAQELTQALEGVSDVALRHRNVMVSHPLRISVPASFCLYWLMPRIAQFYQQYPDVNLRIDSAVSSEQESTGRYDLVIRRQPDAISQIKPFFCDHSTLLASPGFISCHPVSVPQDVLSEACIETLTRPRSWTKWCEAAGIKHVPRSSVHRFDHFYVTAEAIKAGLGFGIGPVNLLQNSLQKGDIQIVFPDIITDAYCYYALTPVGVQKTVAHRAFESWLFSTGNAAG

Flanking regions ( +/- flanking 50bp)

TGCCTGCAGCGCTGAAAACTCACACCCTTGTGAATAAAAAGAGGATGTTAATGCGCGAATTACCTCCGCTCTCTGCATTACGGGCATTTCTGGCTGCCTGTCAGAGTGACAGCTTCAGTGAGGCGGCAGAAAAACTGAATGTTACTCACGGGGTTATCAGCAAACAGGTGCAGGTGGCAGAAACCTGGTTCGGTGCCACCTTGTTTGAGCGCAAAGGCTCCAGGCGCGTGGCGACACCTTATGCTCTGACATTGGCGCAGGAACTGACTCAGGCACTGGAGGGTGTGAGTGATGTTGCATTACGTCACCGCAACGTGATGGTGAGTCATCCGCTGCGCATCAGTGTGCCCGCGTCGTTTTGTCTGTATTGGCTGATGCCGCGTATCGCTCAGTTTTATCAGCAATATCCGGATGTAAACCTGAGAATTGACTCTGCGGTCAGCAGTGAGCAGGAGAGCACCGGGCGGTATGATTTGGTTATCCGCCGTCAGCCTGATGCGATATCACAGATAAAACCGTTTTTTTGTGATCACAGTACATTGCTGGCGTCACCCGGTTTTATCAGCTGCCATCCGGTTTCTGTACCGCAGGATGTTCTCAGTGAGGCGTGTATTGAAACACTGACCCGTCCCCGCAGTTGGACAAAGTGGTGTGAAGCCGCCGGAATCAAACATGTGCCGCGCAGTAGTGTGCACCGGTTTGATCATTTCTATGTAACGGCAGAAGCCATTAAAGCAGGGCTGGGGTTTGGCATTGGTCCGGTGAATCTGTTGCAGAACAGTCTGCAAAAAGGGGATATTCAGATTGTTTTCCCCGACATTATCACCGATGCTTATTGTTATTATGCCCTGACACCGGTCGGCGTTCAGAAAACGGTAGCACACCGGGCGTTTGAATCCTGGCTTTTCAGTACAGGAAATGCAGCCGGATAACGGAGGAATTATGTGGAATATTCACCCGACGCGGGAGAAATTCGAATTAT